BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0824500 Os02g0824500|AK111296
(179 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0824500 Similar to Remorin 272 7e-74
Os04g0533300 Similar to Remorin (pp34) 139 2e-33
AK105097 139 2e-33
Os03g0111200 Similar to Remorin 106 8e-24
Os02g0642200 Similar to Remorin 100 4e-22
Os10g0503800 Similar to Remorin 72 3e-13
>Os02g0824500 Similar to Remorin
Length = 179
Score = 272 bits (696), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 141/179 (78%), Positives = 141/179 (78%)
Query: 1 METQXXXXXXXXXXXXXXXXXXXXKPAAGDAGAVTKTNGPSAPAGKAATPTGSVDRDAIL 60
METQ KPAAGDAGAVTKTNGPSAPAGKAATPTGSVDRDAIL
Sbjct: 1 METQEAKRADVAAAPATATGGEAVKPAAGDAGAVTKTNGPSAPAGKAATPTGSVDRDAIL 60
Query: 61 ANVELERKLSMIXXXXXXXXXXXXXXXXXXMSSILSWENTRKAAIEAKLRTQEEKLERKK 120
ANVELERKLSMI MSSILSWENTRKAAIEAKLRTQEEKLERKK
Sbjct: 61 ANVELERKLSMIKAWEESEKSKAENKAQKKMSSILSWENTRKAAIEAKLRTQEEKLERKK 120
Query: 121 AEYAEKMRNQVAAIHKAAEEKRATVEATRHEEIIKYEEMAAKHRSKGTTPTKFLSCFGS 179
AEYAEKMRNQVAAIHKAAEEKRATVEATRHEEIIKYEEMAAKHRSKGTTPTKFLSCFGS
Sbjct: 121 AEYAEKMRNQVAAIHKAAEEKRATVEATRHEEIIKYEEMAAKHRSKGTTPTKFLSCFGS 179
>Os04g0533300 Similar to Remorin (pp34)
Length = 206
Score = 139 bits (349), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 76/149 (51%), Positives = 97/149 (65%), Gaps = 1/149 (0%)
Query: 31 AGAVTKTNGPSAPAGKAATPTGSVDRDAILANVELERKLSMIXXXXXXXXXXXXXXXXXX 90
A A+ + PA K A GS DRD LA VE E++ S+I
Sbjct: 59 ALAIVEKVADEPPAEKPAQ-GGSNDRDVALARVETEKRNSLIKAWEENEKTKAENKASKK 117
Query: 91 MSSILSWENTRKAAIEAKLRTQEEKLERKKAEYAEKMRNQVAAIHKAAEEKRATVEATRH 150
+S+ILSWENT+KA IEA+L+ EE+LE+KKAEYAEKM+N+VA +HK AEEKRA VEA R
Sbjct: 118 LSAILSWENTKKANIEAQLKKIEEQLEKKKAEYAEKMKNKVAIVHKEAEEKRAMVEAKRG 177
Query: 151 EEIIKYEEMAAKHRSKGTTPTKFLSCFGS 179
EE++K EEMAAK+R+ G P K + CFG+
Sbjct: 178 EEVLKAEEMAAKYRATGHAPKKLIGCFGA 206
>AK105097
Length = 206
Score = 139 bits (349), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 76/149 (51%), Positives = 97/149 (65%), Gaps = 1/149 (0%)
Query: 31 AGAVTKTNGPSAPAGKAATPTGSVDRDAILANVELERKLSMIXXXXXXXXXXXXXXXXXX 90
A A+ + PA K A GS DRD LA VE E++ S+I
Sbjct: 59 ALAIVEKVADEPPAEKPAQ-GGSNDRDVALARVETEKRNSLIKAWEENEKTKAENKASKK 117
Query: 91 MSSILSWENTRKAAIEAKLRTQEEKLERKKAEYAEKMRNQVAAIHKAAEEKRATVEATRH 150
+S+ILSWENT+KA IEA+L+ EE+LE+KKAEYAEKM+N+VA +HK AEEKRA VEA R
Sbjct: 118 LSAILSWENTKKANIEAQLKKIEEQLEKKKAEYAEKMKNKVAIVHKEAEEKRAMVEAKRG 177
Query: 151 EEIIKYEEMAAKHRSKGTTPTKFLSCFGS 179
EE++K EEMAAK+R+ G P K + CFG+
Sbjct: 178 EEVLKAEEMAAKYRATGHAPKKLIGCFGA 206
>Os03g0111200 Similar to Remorin
Length = 175
Score = 106 bits (265), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 57/126 (45%), Positives = 78/126 (61%)
Query: 52 GSVDRDAILANVELERKLSMIXXXXXXXXXXXXXXXXXXMSSILSWENTRKAAIEAKLRT 111
GS +RDA LA + E++L +I +S I SWEN +KA +EA+L+
Sbjct: 48 GSAERDAYLAKIVSEKRLVLINAWEESEKARAENRAAKKLSYITSWENAKKAEMEAELKR 107
Query: 112 QEEKLERKKAEYAEKMRNQVAAIHKAAEEKRATVEATRHEEIIKYEEMAAKHRSKGTTPT 171
E++LE+KKA Y EK++N++A +HK AEEKRA A R EE+I EEMAAK+R+KG PT
Sbjct: 108 IEQELEKKKAAYEEKLKNKLALLHKTAEEKRALTTAKRGEELIMAEEMAAKYRAKGEAPT 167
Query: 172 KFLSCF 177
K
Sbjct: 168 KLFGLL 173
>Os02g0642200 Similar to Remorin
Length = 203
Score = 100 bits (250), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 63/127 (49%), Positives = 84/127 (66%)
Query: 53 SVDRDAILANVELERKLSMIXXXXXXXXXXXXXXXXXXMSSILSWENTRKAAIEAKLRTQ 112
S DRD LA VE +++ S+I + I+SWENT+KA I+ +L+ +
Sbjct: 77 SNDRDIALAKVETDKRESLIKAWEENEKAKAENRASKKLLDIISWENTKKAVIKTQLKKK 136
Query: 113 EEKLERKKAEYAEKMRNQVAAIHKAAEEKRATVEATRHEEIIKYEEMAAKHRSKGTTPTK 172
EE+LERKKAEYAEK +N+ A +HK AEEKRA V A R EE+IK EE+AAK+R+ G TP K
Sbjct: 137 EEELERKKAEYAEKAKNKEAIVHKEAEEKRAMVMARRGEEVIKAEEIAAKYRATGVTPKK 196
Query: 173 FLSCFGS 179
+ CFG+
Sbjct: 197 HIGCFGA 203
>Os10g0503800 Similar to Remorin
Length = 65
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/66 (60%), Positives = 48/66 (72%), Gaps = 2/66 (3%)
Query: 113 EEKLERKKAEYAEKMRNQVAAIHKAAEEKRATVEATRHEEIIKYEEMAAKHRSKGTTPTK 172
+E LERKKAE EK+ N VA +H+AAEEKRA EA R EE++K EE AAK+R+KG P K
Sbjct: 2 QEYLERKKAEQVEKLMNGVAKVHRAAEEKRAATEARRGEEVVKAEEAAAKYRAKGEPPKK 61
Query: 173 FLSCFG 178
L FG
Sbjct: 62 LL--FG 65
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.307 0.120 0.320
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,512,442
Number of extensions: 138021
Number of successful extensions: 873
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 872
Number of HSP's successfully gapped: 6
Length of query: 179
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 85
Effective length of database: 12,127,685
Effective search space: 1030853225
Effective search space used: 1030853225
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 153 (63.5 bits)