Os10g0503800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Remorin.
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Os10g0503800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Remorin.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 149.34 | 0.574 | 15.6 | -1.88 | 0.969 | -1.74 | -0.579 | 4.63 | -0.434 | 23.8 | 26 | 4608 | -- | -- |
| 149.8 | 0.57 | 15.5 | -0.794 | 0.967 | -1.46 | -0.477 | -- | -0.376 | 23.6 | 22.2 | 3261 | -- | -- |
| 150.77 | 0.572 | 15.6 | -1.86 | 0.976 | -1.75 | -- | 4.66 | -0.432 | 23.9 | 26 | 4585 | -- | -- |
| 150.85 | 0.572 | 15.5 | -0.728 | 0.996 | -1.42 | -- | -- | -0.389 | 23.5 | 22.5 | 3148 | -- | -- |
| 199.04 | 0.657 | 15.6 | -1.97 | -- | -1.79 | -- | 4.48 | -0.486 | -- | 25.59 | 5309 | -- | -- |
| 218.83 | 0.693 | 15.4 | -0.0665 | 1.02 | -- | -0.569 | -- | 0.162 | 23.7 | -- | -- | -- | -- |
| 220.21 | 0.695 | 15.4 | -0.0441 | 1.02 | -- | -- | -- | 0.164 | 23.8 | -- | -- | -- | -- |
| 199.11 | 0.657 | 15.5 | -0.504 | -- | -1.42 | -- | -- | -0.255 | -- | 21.9 | 917 | -- | -- |
| 161.06 | 0.591 | 15.5 | -- | 0.959 | -1.18 | -- | -- | -0.285 | 23.5 | 23.07 | 2957 | -- | -- |
| 285.54 | 0.79 | 15.4 | -0.0144 | -- | -- | -- | -- | 0.177 | -- | -- | -- | -- | -- |
| 220.26 | 0.694 | 15.4 | -- | 1.02 | -- | -- | -- | 0.169 | 23.8 | -- | -- | -- | -- |
| 201.11 | 0.66 | 15.5 | -- | -- | -1.24 | -- | -- | -0.264 | -- | 24.1 | 817 | -- | -- |
| 285.54 | 0.789 | 15.4 | -- | -- | -- | -- | -- | 0.178 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 146.62 | temperature | 20 | 4320 | > th | dose dependent | rect. | 5 | 2 |
| 2 | 146.65 | temperature | 20 | 4320 | > th | dose dependent | rect. | 2 | 6 |
| 14 | 147.32 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 2 |
| 61 | 148.81 | temperature | 25 | 4320 | > th | dose independent | rect. | 5 | 8 |
| 63 | 148.83 | temperature | 20 | 4320 | < th | dose independent | rect. | 4 | 2 |
| 64 | 148.85 | temperature | 25 | 4320 | < th | dose independent | rect. | 5 | 8 |
| 71 | 148.98 | temperature | 20 | 4320 | > th | dose dependent | sin | 8 | NA |
| 85 | 149.18 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 97 | 149.32 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 2 |
| 98 | 149.33 | temperature | 20 | 4320 | > th | dose dependent | rect. | 17 | 15 |
| 115 | 149.47 | temperature | 25 | 4320 | > th | dose dependent | rect. | 12 | 1 |
| 132 | 149.59 | temperature | 20 | 720 | > th | dose dependent | sin | 8 | NA |
| 143 | 149.64 | temperature | 25 | 4320 | > th | dose dependent | rect. | 11 | 4 |
| 161 | 149.72 | temperature | 20 | 4320 | > th | dose independent | rect. | 4 | 2 |
| 177 | 149.85 | radiation | 1 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 187 | 149.90 | temperature | 25 | 1440 | < th | dose independent | rect. | 5 | 17 |
| 192 | 149.95 | temperature | 25 | 4320 | > th | dose dependent | rect. | 14 | 1 |
| 197 | 149.98 | radiation | 1 | 43200 | < th | dose independent | rect. | 9 | 2 |
| 209 | 150.07 | humidity | 90 | 43200 | < th | dose independent | rect. | 21 | 2 |
| 231 | 150.16 | temperature | 25 | 4320 | > th | dose independent | sin | 3 | NA |
| 256 | 150.25 | temperature | 25 | 4320 | < th | dose independent | sin | 3 | NA |
| 259 | 150.25 | radiation | 1 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 295 | 150.41 | temperature | 25 | 1440 | > th | dose independent | rect. | 5 | 17 |
| 314 | 150.46 | temperature | 25 | 1440 | > th | dose independent | rect. | 3 | 19 |
| 330 | 150.50 | humidity | 90 | 43200 | > th | dose dependent | rect. | 3 | 23 |
| 346 | 150.53 | humidity | 90 | 43200 | > th | dose dependent | rect. | 8 | 19 |
| 348 | 150.54 | humidity | 90 | 43200 | > th | dose dependent | rect. | 5 | 22 |
| 351 | 150.55 | humidity | 90 | 43200 | > th | dose dependent | rect. | 10 | 16 |
| 354 | 150.56 | humidity | 90 | 43200 | > th | dose dependent | rect. | 19 | 19 |
| 374 | 150.61 | temperature | 25 | 4320 | < th | dose independent | rect. | 2 | 17 |
| 415 | 150.69 | humidity | 90 | 43200 | < th | dose independent | rect. | 18 | 6 |
| 445 | 150.74 | temperature | 25 | 4320 | > th | dose independent | rect. | 2 | 17 |
| 456 | 150.76 | humidity | 90 | 43200 | > th | dose dependent | no | NA | NA |
| 465 | 150.77 | humidity | 90 | 43200 | > th | dose dependent | sin | 17 | NA |
| 481 | 150.81 | humidity | 80 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 573 | 150.96 | temperature | 25 | 4320 | < th | dose independent | rect. | 23 | 20 |
| 581 | 150.98 | humidity | 80 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 644 | 151.07 | temperature | 25 | 4320 | > th | dose independent | rect. | 23 | 20 |
| 663 | 151.10 | temperature | 20 | 4320 | > th | dose dependent | no | NA | NA |
| 668 | 151.11 | temperature | 15 | 43200 | > th | dose independent | rect. | 2 | 2 |
| 690 | 151.15 | temperature | 20 | 4320 | > th | dose dependent | rect. | 23 | 23 |
| 691 | 151.16 | temperature | 15 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 695 | 151.16 | radiation | 1 | 43200 | < th | dose dependent | rect. | 17 | 2 |
| 711 | 151.18 | radiation | 1 | 43200 | < th | dose dependent | rect. | 17 | 5 |
| 716 | 151.19 | temperature | 25 | 4320 | > th | dose dependent | sin | 2 | NA |
| 736 | 151.23 | radiation | 1 | 43200 | < th | dose dependent | rect. | 17 | 10 |
| 787 | 151.31 | humidity | 90 | 43200 | > th | dose independent | rect. | 9 | 17 |
| 820 | 151.36 | temperature | 20 | 4320 | > th | dose dependent | rect. | 5 | 23 |
| 918 | 151.53 | humidity | 90 | 43200 | < th | dose independent | rect. | 10 | 16 |
| 923 | 151.53 | radiation | 1 | 43200 | < th | dose dependent | rect. | 17 | 16 |
| 932 | 151.54 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 4 |
| 947 | 151.58 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 954 | 151.59 | radiation | 1 | 43200 | < th | dose dependent | rect. | 17 | 18 |
| 990 | 151.64 | radiation | 1 | 43200 | < th | dose dependent | rect. | 6 | 5 |