Os04g0533300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Remorin (pp34).
FiT-DB / Search/ Help/ Sample detail
|
Os04g0533300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Remorin (pp34).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 45.8 | 0.318 | 15.3 | 0.227 | 0.73 | 0.412 | -0.248 | -0.877 | -0.0347 | 15.4 | 19.51 | 1263 | -- | -- |
| 47.47 | 0.321 | 15.3 | 0.224 | 0.738 | 0.405 | -0.391 | -- | -0.0423 | 15.3 | 19.5 | 1326 | -- | -- |
| 45.94 | 0.316 | 15.3 | 0.226 | 0.731 | 0.415 | -- | -0.964 | -0.0337 | 15.5 | 19.51 | 1244 | -- | -- |
| 47.9 | 0.322 | 15.3 | 0.19 | 0.709 | 0.404 | -- | -- | -0.0478 | 15.5 | 19.51 | 1270 | -- | -- |
| 75.52 | 0.405 | 15.3 | 0.204 | -- | 0.473 | -- | -0.898 | -0.0283 | -- | 19.26 | 1273 | -- | -- |
| 52.3 | 0.339 | 15.3 | 0.123 | 0.775 | -- | -0.406 | -- | -0.144 | 14.8 | -- | -- | -- | -- |
| 52.84 | 0.34 | 15.3 | 0.114 | 0.776 | -- | -- | -- | -0.146 | 15 | -- | -- | -- | -- |
| 76.63 | 0.408 | 15.3 | 0.125 | -- | 0.519 | -- | -- | -0.0584 | -- | 19.2 | 1295 | -- | -- |
| 48.43 | 0.324 | 15.3 | -- | 0.731 | 0.394 | -- | -- | -0.057 | 15.4 | 19.51 | 1274 | -- | -- |
| 87.49 | 0.437 | 15.3 | 0.0804 | -- | -- | -- | -- | -0.166 | -- | -- | -- | -- | -- |
| 53.18 | 0.341 | 15.3 | -- | 0.774 | -- | -- | -- | -0.158 | 15 | -- | -- | -- | -- |
| 77.08 | 0.409 | 15.3 | -- | -- | 0.525 | -- | -- | -0.06 | -- | 19.23 | 1294 | -- | -- |
| 87.66 | 0.437 | 15.3 | -- | -- | -- | -- | -- | -0.175 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 42.28 | wind | 1 | 43200 | > th | dose independent | rect. | 4 | 2 |
| 2 | 42.43 | wind | 1 | 43200 | < th | dose independent | rect. | 4 | 2 |
| 3 | 42.52 | wind | 1 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 4 | 42.69 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 12 |
| 5 | 42.75 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 12 |
| 6 | 42.79 | temperature | 20 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 15 | 42.88 | temperature | 30 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 20 | 42.90 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 4 |
| 26 | 42.91 | temperature | 25 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 30 | 42.92 | temperature | 25 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 33 | 42.93 | temperature | 15 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 59 | 42.96 | temperature | 25 | 43200 | < th | dose independent | rect. | 8 | 6 |
| 62 | 42.96 | temperature | 30 | 43200 | < th | dose dependent | rect. | 19 | 1 |
| 83 | 42.98 | temperature | 25 | 43200 | > th | dose independent | rect. | 8 | 6 |
| 109 | 42.99 | temperature | 15 | 43200 | > th | dose dependent | rect. | 8 | 14 |
| 143 | 43.01 | temperature | 10 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 218 | 43.03 | temperature | 30 | 43200 | < th | dose dependent | rect. | 8 | 14 |
| 268 | 43.05 | wind | 1 | 43200 | < th | dose independent | rect. | 2 | 3 |
| 272 | 43.05 | temperature | 25 | 43200 | < th | dose independent | rect. | 9 | 12 |
| 275 | 43.05 | temperature | 15 | 43200 | > th | dose dependent | sin | 20 | NA |
| 418 | 43.08 | temperature | 25 | 43200 | < th | dose independent | sin | 22 | NA |
| 422 | 43.08 | temperature | 25 | 43200 | > th | dose independent | rect. | 9 | 12 |
| 427 | 43.08 | temperature | 30 | 43200 | < th | dose dependent | sin | 21 | NA |
| 450 | 43.08 | temperature | 30 | 43200 | < th | dose dependent | rect. | 13 | 9 |
| 544 | 43.10 | temperature | 25 | 43200 | > th | dose independent | sin | 23 | NA |
| 560 | 43.10 | temperature | 30 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 939 | 43.16 | wind | 3 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 950 | 43.16 | temperature | 15 | 43200 | > th | dose dependent | no | NA | NA |
| 998 | 43.16 | temperature | 15 | 43200 | > th | dose dependent | rect. | 18 | 20 |