BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0533300 Os04g0533300|AK106182
(206 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0533300 Similar to Remorin (pp34) 205 2e-53
AK105097 205 2e-53
Os02g0642200 Similar to Remorin 135 1e-32
Os03g0111200 Similar to Remorin 99 3e-21
Os02g0824500 Similar to Remorin 96 2e-20
>Os04g0533300 Similar to Remorin (pp34)
Length = 206
Score = 205 bits (521), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 109/152 (71%), Positives = 109/152 (71%)
Query: 55 DDSKALAIVEKVADEPPAEKPAQGGSNDRDVALARVETEKRNSLIXXXXXXXXXXXXXXX 114
DDSKALAIVEKVADEPPAEKPAQGGSNDRDVALARVETEKRNSLI
Sbjct: 55 DDSKALAIVEKVADEPPAEKPAQGGSNDRDVALARVETEKRNSLIKAWEENEKTKAENKA 114
Query: 115 XXXLSAILSWENTKKANIXXXXXXXXXXXXXXXXXXXXXXXXXVAIVHKEAEEKRAMVEA 174
LSAILSWENTKKANI VAIVHKEAEEKRAMVEA
Sbjct: 115 SKKLSAILSWENTKKANIEAQLKKIEEQLEKKKAEYAEKMKNKVAIVHKEAEEKRAMVEA 174
Query: 175 KRGEEVLKAEEMAAKYRATGHAPKKLIGCFGA 206
KRGEEVLKAEEMAAKYRATGHAPKKLIGCFGA
Sbjct: 175 KRGEEVLKAEEMAAKYRATGHAPKKLIGCFGA 206
>AK105097
Length = 206
Score = 205 bits (521), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 109/152 (71%), Positives = 109/152 (71%)
Query: 55 DDSKALAIVEKVADEPPAEKPAQGGSNDRDVALARVETEKRNSLIXXXXXXXXXXXXXXX 114
DDSKALAIVEKVADEPPAEKPAQGGSNDRDVALARVETEKRNSLI
Sbjct: 55 DDSKALAIVEKVADEPPAEKPAQGGSNDRDVALARVETEKRNSLIKAWEENEKTKAENKA 114
Query: 115 XXXLSAILSWENTKKANIXXXXXXXXXXXXXXXXXXXXXXXXXVAIVHKEAEEKRAMVEA 174
LSAILSWENTKKANI VAIVHKEAEEKRAMVEA
Sbjct: 115 SKKLSAILSWENTKKANIEAQLKKIEEQLEKKKAEYAEKMKNKVAIVHKEAEEKRAMVEA 174
Query: 175 KRGEEVLKAEEMAAKYRATGHAPKKLIGCFGA 206
KRGEEVLKAEEMAAKYRATGHAPKKLIGCFGA
Sbjct: 175 KRGEEVLKAEEMAAKYRATGHAPKKLIGCFGA 206
>Os02g0642200 Similar to Remorin
Length = 203
Score = 135 bits (341), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 84/158 (53%), Positives = 93/158 (58%), Gaps = 6/158 (3%)
Query: 55 DDSKALAI-VEKVADEPPAEKPAQGG-----SNDRDVALARVETEKRNSLIXXXXXXXXX 108
DDSKAL + VEKVAD+P AEK SNDRD+ALA+VET+KR SLI
Sbjct: 46 DDSKALVVFVEKVADKPHAEKATATATPTRTSNDRDIALAKVETDKRESLIKAWEENEKA 105
Query: 109 XXXXXXXXXLSAILSWENTKKANIXXXXXXXXXXXXXXXXXXXXXXXXXVAIVHKEAEEK 168
L I+SWENTKKA I AIVHKEAEEK
Sbjct: 106 KAENRASKKLLDIISWENTKKAVIKTQLKKKEEELERKKAEYAEKAKNKEAIVHKEAEEK 165
Query: 169 RAMVEAKRGEEVLKAEEMAAKYRATGHAPKKLIGCFGA 206
RAMV A+RGEEV+KAEE+AAKYRATG PKK IGCFGA
Sbjct: 166 RAMVMARRGEEVIKAEEIAAKYRATGVTPKKHIGCFGA 203
>Os03g0111200 Similar to Remorin
Length = 175
Score = 98.6 bits (244), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 62/152 (40%), Positives = 76/152 (50%), Gaps = 8/152 (5%)
Query: 55 DDSKALAIVEKVADEPPAEKPAQGGSNDRDVALARVETEKRNSLIXXXXXXXXXXXXXXX 114
DDSKA+ +V+ E A GGS +RD LA++ +EKR LI
Sbjct: 32 DDSKAIVLVK--------EAEATGGSAERDAYLAKIVSEKRLVLINAWEESEKARAENRA 83
Query: 115 XXXLSAILSWENTKKANIXXXXXXXXXXXXXXXXXXXXXXXXXVAIVHKEAEEKRAMVEA 174
LS I SWEN KKA + +A++HK AEEKRA+ A
Sbjct: 84 AKKLSYITSWENAKKAEMEAELKRIEQELEKKKAAYEEKLKNKLALLHKTAEEKRALTTA 143
Query: 175 KRGEEVLKAEEMAAKYRATGHAPKKLIGCFGA 206
KRGEE++ AEEMAAKYRA G AP KL G A
Sbjct: 144 KRGEELIMAEEMAAKYRAKGEAPTKLFGLLKA 175
>Os02g0824500 Similar to Remorin
Length = 179
Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/137 (41%), Positives = 70/137 (51%), Gaps = 1/137 (0%)
Query: 71 PAEKPAQ-GGSNDRDVALARVETEKRNSLIXXXXXXXXXXXXXXXXXXLSAILSWENTKK 129
PA K A GS DRD LA VE E++ S+I +S+ILSWENT+K
Sbjct: 43 PAGKAATPTGSVDRDAILANVELERKLSMIKAWEESEKSKAENKAQKKMSSILSWENTRK 102
Query: 130 ANIXXXXXXXXXXXXXXXXXXXXXXXXXVAIVHKEAEEKRAMVEAKRGEEVLKAEEMAAK 189
A I VA +HK AEEKRA VEA R EE++K EEMAAK
Sbjct: 103 AAIEAKLRTQEEKLERKKAEYAEKMRNQVAAIHKAAEEKRATVEATRHEEIIKYEEMAAK 162
Query: 190 YRATGHAPKKLIGCFGA 206
+R+ G P K + CFG+
Sbjct: 163 HRSKGTTPTKFLSCFGS 179
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.309 0.125 0.338
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,507,595
Number of extensions: 82893
Number of successful extensions: 269
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 255
Number of HSP's successfully gapped: 6
Length of query: 206
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 110
Effective length of database: 12,023,257
Effective search space: 1322558270
Effective search space used: 1322558270
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 153 (63.5 bits)