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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0642200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Remorin.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.62 (0.0378) R2 : 0.889
β1 : -2.1 (0.138) R2dD : 0.0587 R2D : 0.0477
β2 : 1.83 (0.138) R2dC : 0.0873 R2C : 0.368
β3 : 4.17 (0.138) R2dE : 0.455 R2E : 0.716
β4 : -4.44 (0.427) R2dD*C : 0.0263 R2D*C : 0.024
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.205 (0.0804) R2dN8 : 0.00209 R2N8 : -0.00586
σ : 0.703
deviance : 228.11
__
_____
C
peak time of C : 7.44
E
wheather : humidity
threshold : 53.63
memory length : 92
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 3.15
open length of G : 6.05

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
226.63 0.707 4.62 -2.03 1.83 4.12 -5.2 1.13 -0.191 7.36 52.54 96 3.08 6.05
228.11 0.703 4.62 -2.1 1.83 4.17 -4.44 -- -0.205 7.44 53.63 92 3.15 6.05
277.72 0.776 4.6 -2.18 2.11 3.79 -- -0.861 -0.165 7.19 50.07 100 3.02 6.13
280.89 0.781 4.62 -2.19 1.8 4.15 -- -- -0.21 7.65 49.45 92 3.15 5.98
329.07 0.845 4.71 -2.37 -- 5.24 -- -2.65 -0.327 -- 41.05 117 2.83 6.55
628.66 1.18 4.52 -1.95 4.99 -- -4.12 -- -0.0879 6.72 -- -- -- --
671.68 1.21 4.52 -2.01 4.97 -- -- -- -0.0767 6.7 -- -- -- --
349.75 0.871 4.69 -2.23 -- 5.22 -- -- -0.287 -- 39.9 118 2.86 6.49
407.89 0.941 4.56 -- 1.83 4.08 -- -- 0.028 7.63 48.63 88 3.23 5.98
1963.23 2.07 4.62 -1.9 -- -- -- -- 0.022 -- -- -- -- --
778.62 1.31 4.47 -- 4.95 -- -- -- 0.148 6.73 -- -- -- --
480.09 1.02 4.64 -- -- 5.16 -- -- -0.0474 -- 38.8 118 2.88 6.5
2058.4 2.12 4.57 -- -- -- -- -- 0.233 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 233.33 humidity 50.0 90 > th dose dependent rect. 3 6
2 236.19 wind 7.0 90 < th dose dependent rect. 3 6
6 242.79 humidity 60.0 90 > th dose dependent rect. 3 8
7 245.55 temperature 10.0 270 > th dose dependent rect. 3 2
11 251.12 radiation 20.0 90 < th dose independent rect. 3 6
13 252.03 temperature 10.0 270 > th dose dependent rect. 2 5
14 252.60 radiation 40.0 90 < th dose dependent rect. 3 6
21 258.69 wind 3.0 90 < th dose independent rect. 3 6
22 259.10 precipitation 0.1 90 < th dose independent rect. 3 6
23 259.10 precipitation 0.1 90 < th dose dependent rect. 3 6
24 259.20 humidity 60.0 270 > th dose dependent rect. 3 2
29 261.38 temperature 15.0 90 > th dose independent rect. 9 18
32 263.27 radiation 40.0 90 < th dose independent rect. 3 6
34 264.82 humidity 60.0 90 > th dose independent rect. 3 6
35 264.90 wind 9.0 90 < th dose independent rect. 9 18
36 265.22 wind 9.0 90 < th dose independent rect. 3 6
37 265.22 temperature 10.0 90 > th dose independent rect. 3 6
40 265.22 atmosphere 995.0 90 > th dose independent rect. 3 6
41 265.22 atmosphere 1015.0 90 < th dose independent rect. 3 6
43 266.02 humidity 80.0 90 > th dose independent rect. 3 6
45 266.94 radiation 40.0 90 < th dose dependent rect. 3 8
46 267.11 wind 9.0 270 < th dose dependent rect. 3 2
50 268.25 precipitation 0.1 270 < th dose independent rect. 3 2
51 268.25 precipitation 0.1 270 < th dose dependent rect. 3 2
57 269.32 humidity 80.0 270 > th dose independent rect. 3 2
64 270.39 humidity 60.0 270 > th dose dependent rect. 1 7
68 272.16 temperature 30.0 90 < th dose independent rect. 3 6
70 272.47 radiation 1.0 270 < th dose independent rect. 3 2
72 272.48 radiation 10.0 270 < th dose dependent rect. 3 2
77 272.92 wind 9.0 270 < th dose independent rect. 3 2
78 272.92 temperature 10.0 270 > th dose independent rect. 3 2
80 272.92 temperature 30.0 270 < th dose independent rect. 3 2
81 272.92 humidity 50.0 270 > th dose independent rect. 3 2
84 272.92 atmosphere 995.0 270 > th dose independent rect. 3 2
85 272.92 atmosphere 1010.0 270 < th dose independent rect. 3 2
90 272.92 temperature 10.0 270 > th dose independent rect. 5 22
101 276.34 precipitation 0.1 90 < th dose independent rect. 9 18
102 276.34 precipitation 0.1 90 < th dose dependent rect. 9 18
109 278.81 wind 9.0 270 < th dose independent rect. 5 22
150 286.38 atmosphere 995.0 90 > th dose independent rect. 9 18
153 287.37 radiation 30.0 270 < th dose dependent rect. 1 8
178 289.19 precipitation 0.1 270 < th dose independent rect. 1 6
179 289.19 precipitation 0.1 270 < th dose dependent rect. 1 6
197 289.43 temperature 10.0 270 > th dose independent rect. 6 20
206 291.15 precipitation 0.1 270 < th dose independent rect. 5 22
207 291.15 precipitation 0.1 270 < th dose dependent rect. 5 22
213 291.49 wind 9.0 270 < th dose independent rect. 6 20
220 292.40 wind 9.0 270 < th dose independent rect. 1 6
222 292.44 temperature 10.0 270 > th dose independent rect. 1 6
224 292.44 temperature 30.0 270 < th dose independent rect. 1 6
225 292.44 humidity 50.0 270 > th dose independent rect. 1 6
227 292.44 atmosphere 995.0 270 > th dose independent rect. 1 6
228 292.44 atmosphere 1015.0 270 < th dose independent rect. 1 6
265 295.36 precipitation 0.1 270 < th dose independent rect. 6 20
266 295.36 precipitation 0.1 270 < th dose dependent rect. 6 20
276 296.18 precipitation 0.1 270 < th dose independent rect. 7 18
277 296.18 precipitation 0.1 270 < th dose dependent rect. 7 18
279 296.49 humidity 50.0 10 > th dose dependent rect. 4 5
340 301.92 temperature 10.0 10 > th dose dependent rect. 3 6
428 309.13 wind 3.0 10 < th dose independent rect. 4 5
458 310.94 radiation 40.0 10 < th dose dependent rect. 4 5
459 311.65 radiation 30.0 10 < th dose independent rect. 4 5
466 312.14 precipitation 0.1 10 < th dose independent rect. 3 6
467 312.14 precipitation 0.1 10 < th dose dependent rect. 3 6
471 312.77 wind 1.0 270 > th dose independent rect. 7 19
481 313.45 atmosphere 995.0 270 > th dose independent rect. 6 20
486 313.72 atmosphere 1015.0 90 < th dose independent rect. 9 18
508 315.34 temperature 15.0 10 > th dose independent rect. 9 19
525 316.82 precipitation 0.1 90 < th dose independent rect. 21 6
526 316.82 precipitation 0.1 90 < th dose dependent rect. 21 6
529 317.00 humidity 70.0 10 > th dose independent rect. 4 5
535 317.28 wind 9.0 90 < th dose independent rect. 21 6
536 317.28 temperature 10.0 90 > th dose independent rect. 21 6
537 317.28 temperature 30.0 90 < th dose independent rect. 21 6
538 317.28 humidity 50.0 90 > th dose independent rect. 21 6
541 317.28 atmosphere 995.0 90 > th dose independent rect. 21 6
542 317.28 radiation 1.0 90 < th dose independent rect. 21 6
547 317.28 temperature 10.0 90 > th dose independent rect. 3 18
548 317.28 atmosphere 1015.0 90 < th dose independent rect. 3 18
549 317.28 radiation 1.0 90 < th dose dependent rect. 21 6
563 318.20 wind 9.0 10 < th dose independent rect. 4 5
564 318.20 temperature 10.0 10 > th dose independent rect. 4 5
566 318.20 temperature 30.0 10 < th dose independent rect. 4 5
567 318.20 humidity 50.0 10 > th dose independent rect. 4 5
569 318.20 atmosphere 995.0 10 > th dose independent rect. 4 5
570 318.20 atmosphere 1015.0 10 < th dose independent rect. 4 5
600 318.93 wind 9.0 90 < th dose dependent rect. 21 6
601 318.94 precipitation 0.1 90 < th dose independent rect. 3 18
602 318.94 precipitation 0.1 90 < th dose dependent rect. 3 18
603 319.08 wind 9.0 10 < th dose independent rect. 9 19
663 322.70 atmosphere 995.0 270 > th dose dependent rect. 3 2
687 323.63 temperature 15.0 270 > th dose independent rect. 21 15
715 324.93 precipitation 0.1 10 < th dose independent rect. 9 18
716 324.93 precipitation 0.1 10 < th dose dependent rect. 9 18
723 325.24 temperature 10.0 270 > th dose independent rect. 19 7
724 325.24 temperature 30.0 270 < th dose independent rect. 19 7
725 325.24 humidity 50.0 270 > th dose independent rect. 19 7
726 325.24 atmosphere 995.0 270 > th dose independent rect. 19 7
727 325.24 radiation 1.0 270 < th dose independent rect. 19 7
734 325.24 radiation 1.0 270 < th dose dependent rect. 19 7
739 325.25 wind 9.0 270 < th dose independent rect. 19 7
758 325.82 wind 9.0 90 < th dose independent rect. 3 18
765 325.94 precipitation 0.1 270 < th dose independent rect. 19 7
766 325.94 precipitation 0.1 270 < th dose dependent rect. 19 7
783 326.32 wind 9.0 270 < th dose independent rect. 21 15
810 328.33 humidity 50.0 90 > th dose dependent rect. 21 6
813 328.45 temperature 10.0 270 > th dose independent rect. 12 9
815 328.45 atmosphere 995.0 270 > th dose independent rect. 21 15
862 330.69 wind 9.0 270 < th dose independent rect. 12 9
871 331.55 atmosphere 995.0 10 > th dose independent rect. 9 19
887 332.66 atmosphere 995.0 90 > th dose dependent rect. 3 5
896 333.04 atmosphere 1015.0 270 < th dose independent rect. 12 9
904 333.44 temperature 15.0 270 > th dose independent rect. 21 4
906 333.46 humidity 50.0 270 > th dose independent rect. 21 14
909 333.57 radiation 1.0 270 < th dose dependent rect. 21 4
911 333.58 temperature 30.0 270 < th dose independent rect. 21 4
912 333.58 humidity 50.0 270 > th dose independent rect. 21 4
915 333.58 atmosphere 995.0 270 > th dose independent rect. 21 4
916 333.58 radiation 1.0 270 < th dose independent rect. 21 4
921 333.58 temperature 10.0 270 > th dose independent rect. 1 20
926 333.63 wind 9.0 270 < th dose independent rect. 21 4
931 333.68 precipitation 0.1 270 < th dose independent rect. 21 4
932 333.68 precipitation 0.1 270 < th dose dependent rect. 21 4
935 333.82 precipitation 0.1 270 < th dose independent rect. 6 9
936 333.82 precipitation 0.1 270 < th dose dependent rect. 6 9
956 335.14 temperature 10.0 90 > th dose dependent rect. 21 6
958 335.25 precipitation 0.1 270 < th dose independent rect. 21 15
959 335.25 precipitation 0.1 270 < th dose dependent rect. 21 15
965 335.64 precipitation 0.1 270 < th dose independent rect. 12 9
966 335.64 precipitation 0.1 270 < th dose dependent rect. 12 9
968 335.69 atmosphere 995.0 270 > th dose independent rect. 6 9
981 335.98 radiation 40.0 270 < th dose independent rect. 15 15
988 336.28 temperature 10.0 270 > th dose independent rect. 6 9
989 336.28 atmosphere 1015.0 270 < th dose independent rect. 6 9
990 336.28 temperature 10.0 270 > th dose independent rect. 15 15
999 336.62 wind 9.0 270 < th dose independent rect. 15 15