BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0814000 Os02g0814000|AK060071
(252 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0814000 Protein of unknown function DUF862, eukaryotic... 494 e-140
Os10g0472400 Protein of unknown function DUF862, eukaryotic... 296 1e-80
Os06g0560400 Protein of unknown function DUF862, eukaryotic... 68 6e-12
Os04g0548000 Protein of unknown function DUF862, eukaryotic... 65 5e-11
>Os02g0814000 Protein of unknown function DUF862, eukaryotic domain containing
protein
Length = 252
Score = 494 bits (1273), Expect = e-140, Method: Compositional matrix adjust.
Identities = 241/252 (95%), Positives = 241/252 (95%)
Query: 1 MAEEGYKVVLNVYDLSNGLARQLSTSFLGKPIEAIWHTGVVVYGNEYFFGGGIQSLAAGR 60
MAEEGYKVVLNVYDLSNGLARQLSTSFLGKPIEAIWHTGVVVYGNEYFFGGGIQSLAAGR
Sbjct: 1 MAEEGYKVVLNVYDLSNGLARQLSTSFLGKPIEAIWHTGVVVYGNEYFFGGGIQSLAAGR 60
Query: 61 TPYGRPVRVVEMGETHIPREVFEDYLRDISPRYTAETYRLLSHNCNNFSNEVAQFLVGAG 120
TPYGRPVRVVEMGETHIPREVFEDYLRDISPRYTAETYRLLSHNCNNFSNEVAQFLVGAG
Sbjct: 61 TPYGRPVRVVEMGETHIPREVFEDYLRDISPRYTAETYRLLSHNCNNFSNEVAQFLVGAG 120
Query: 121 IPDYILNLPAEVMSSPMGPLIMPMIQNLESTLRTNAAPQATQFXXXXXXXXXXXQNKPGE 180
IPDYILNLPAEVMSSPMGPLIMPMIQNLESTLRTNAAPQATQF QNKPGE
Sbjct: 121 IPDYILNLPAEVMSSPMGPLIMPMIQNLESTLRTNAAPQATQFVPSSVPPPPPPQNKPGE 180
Query: 181 GSSSSKQEDKAAKAKQGSAADPLGGARGKVQEEVMREFAAIMASGTLRASEAAALAMRRV 240
GSSSSKQEDKAAKAKQGSAADPLGGARGKVQEEVMREFAAIMASGTLRASEAAALAMRRV
Sbjct: 181 GSSSSKQEDKAAKAKQGSAADPLGGARGKVQEEVMREFAAIMASGTLRASEAAALAMRRV 240
Query: 241 MERHGNATMQQS 252
MERHGNATMQQS
Sbjct: 241 MERHGNATMQQS 252
>Os10g0472400 Protein of unknown function DUF862, eukaryotic domain containing
protein
Length = 319
Score = 296 bits (757), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 150/277 (54%), Positives = 181/277 (65%), Gaps = 32/277 (11%)
Query: 1 MAEEGYKVVLNVYDLSNGLARQLSTSFLGKPIEAIWHTGVVVYGNEYFFGGGIQSLAAGR 60
MA++ Y V L++YDLS G+ARQLST+ LGK IEAIWHTGVVVYG EYFFGGGIQ GR
Sbjct: 29 MADDDYPVKLHIYDLSQGMARQLSTTILGKAIEAIWHTGVVVYGKEYFFGGGIQKDHPGR 88
Query: 61 TPYGRPVRVVEMGETHIPREVFEDYLRDISPRYTAETYRLLSHNCNNFSNEVAQFLVGAG 120
TPYG PVRV ++G TH+PRE+FED+L+DI+PRYT Y LLS+NCNNF+NE AQFLVG+
Sbjct: 89 TPYGTPVRVEDLGVTHVPREIFEDFLQDINPRYTPANYNLLSNNCNNFTNEAAQFLVGSA 148
Query: 121 IPDYILNLPAEVMSSPMGPLIMPMIQNLESTLRTNAAPQATQFXXXXXXXXXXXQNKPG- 179
IP YIL LP EVM+SP+G LI+PMIQ LE++LR APQ QF Q+ P
Sbjct: 149 IPSYILELPNEVMNSPIGALILPMIQGLETSLRAGVAPQPPQFKPSPVAAVTATQSPPSG 208
Query: 180 ------EGSSSSKQE-------------------------DKAAKAKQGSAADPLGGARG 208
+ ++S K E A DPL A+
Sbjct: 209 SIHVEPKSTASDKTEVDNNGGGIPPAVQPAPVAAATSPAAVAEASMAPPPPVDPLREAKS 268
Query: 209 KVQEEVMREFAAIMASGTLRASEAAALAMRRVMERHG 245
+VQEE+ REFAAIMA+G ++A EAAALA RRVMERHG
Sbjct: 269 RVQEEIKREFAAIMATGAVQAGEAAALATRRVMERHG 305
>Os06g0560400 Protein of unknown function DUF862, eukaryotic domain containing
protein
Length = 216
Score = 67.8 bits (164), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 80/153 (52%), Gaps = 17/153 (11%)
Query: 6 YKVVLNVYDLSNGLARQLSTSFLGKPIEAIWHTGVVVYGNEYFFGG------GIQSLAAG 59
Y VVLNVYDL+ L L LG I+H+ V V+G+EY FG G+ +
Sbjct: 25 YTVVLNVYDLT-PLNNYLHWCGLG-----IFHSAVEVHGSEYSFGAHDHPTSGVFEVEPK 78
Query: 60 RTPYGRPVRV-VEMGETHIPREVFEDYLRDISPRYTAETYRLLSHNCNNFSNEVAQFLVG 118
P G R + +G T + F D+++ ++ Y +TY L+S NCN+F+++++ L G
Sbjct: 79 CCP-GFMYRCSIFIGRTSLNPLEFRDFIQRMASEYHGDTYHLISKNCNHFTDDLSTRLTG 137
Query: 119 AGIPDYILNLPAEVMSSPMGPLIMPMIQNLEST 151
IP ++ N PA++ ++P LEST
Sbjct: 138 KPIPGWV-NRPAKL--GAFCNCLLPESMRLEST 167
>Os04g0548000 Protein of unknown function DUF862, eukaryotic domain containing
protein
Length = 207
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 66/124 (53%), Gaps = 12/124 (9%)
Query: 8 VVLNVYDLSNGLARQLSTSFLGKPIEAIWHTGVVVYGNEYFFGG------GIQSLAAGRT 61
VV+NVYDL+ + L LG I+H+G+ V+G EY FG G+ +
Sbjct: 18 VVVNVYDLT-PMNNYLYWFGLG-----IFHSGIEVHGVEYGFGAHEFPTSGVFEVEPKNC 71
Query: 62 PYGRPVRVVEMGETHIPREVFEDYLRDISPRYTAETYRLLSHNCNNFSNEVAQFLVGAGI 121
P R V MG T + R F ++ ++ +Y +Y L+S NCN+F+++V++ L G I
Sbjct: 72 PGFVYRRSVRMGTTGMSRAEFRSFIEKLTGKYNGNSYHLISKNCNHFTDDVSKNLTGKPI 131
Query: 122 PDYI 125
P ++
Sbjct: 132 PGWV 135
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.131 0.371
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,823,492
Number of extensions: 318280
Number of successful extensions: 1003
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1004
Number of HSP's successfully gapped: 4
Length of query: 252
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 154
Effective length of database: 11,918,829
Effective search space: 1835499666
Effective search space used: 1835499666
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 155 (64.3 bits)