BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0792900 Os02g0792900|AK068367
(414 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0792900 TMS membrane protein/tumour differentially exp... 664 0.0
Os03g0454100 TMS membrane protein/tumour differentially exp... 439 e-123
Os04g0506300 TMS membrane protein/tumour differentially exp... 143 2e-34
Os01g0179800 TMS membrane protein/tumour differentially exp... 134 1e-31
>Os02g0792900 TMS membrane protein/tumour differentially expressed protein family
protein
Length = 414
Score = 664 bits (1713), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/395 (84%), Positives = 332/395 (84%)
Query: 20 RTAVGSIGRRSARIAYCGXXXXXXXXXXXXREVAAPLLQSIPWINHFHKTPDREWFETDA 79
RTAVGSIGRRSARIAYCG REVAAPLLQSIPWINHFHKTPDREWFETDA
Sbjct: 20 RTAVGSIGRRSARIAYCGLFALSLFASWALREVAAPLLQSIPWINHFHKTPDREWFETDA 79
Query: 80 VLRVSLGNFVFFTILAIIMAGIKDQKDPRDKIHHGGWMAKIFCWVVIVFLMFFVPNGVVS 139
VLRVSLGNFVFFTILAIIMAGIKDQKDPRDKIHHGGWMAKIFCWVVIVFLMFFVPNGVVS
Sbjct: 80 VLRVSLGNFVFFTILAIIMAGIKDQKDPRDKIHHGGWMAKIFCWVVIVFLMFFVPNGVVS 139
Query: 140 FYESISKFGSGXXXXXXXXXXXXXXHGWNENWVAKDEQFWYMALLVVSVVCYIVTFSFSG 199
FYESISKFGSG HGWNENWVAKDEQFWYMALLVVSVVCYIVTFSFSG
Sbjct: 140 FYESISKFGSGLFLLVQVVLLLDFVHGWNENWVAKDEQFWYMALLVVSVVCYIVTFSFSG 199
Query: 200 LLFHWFTPSGHDCGXXXXXXXXXXXXXXXXXXXALHPKINGSLLPASVIALYCTYLCYSG 259
LLFHWFTPSGHDCG ALHPKINGSLLPASVIALYCTYLCYSG
Sbjct: 200 LLFHWFTPSGHDCGINLFFIVFTLILVFVFAIVALHPKINGSLLPASVIALYCTYLCYSG 259
Query: 260 LSSEPRDYECNGLHNHSKAXXXXXXXXXXXXXXXXXXYSAVRAGSSATVLSAPDSPRAGA 319
LSSEPRDYECNGLHNHSKA YSAVRAGSSATVLSAPDSPRAGA
Sbjct: 260 LSSEPRDYECNGLHNHSKAVSTGSLSLGLLTTILSVVYSAVRAGSSATVLSAPDSPRAGA 319
Query: 320 DKPLLPFSKADEEAEKKDVPRPVTYSYSFFHLIFSLASMYSAMLLTGWSTSVGESGKLVD 379
DKPLLPFSKADEEAEKKDVPRPVTYSYSFFHLIFSLASMYSAMLLTGWSTSVGESGKLVD
Sbjct: 320 DKPLLPFSKADEEAEKKDVPRPVTYSYSFFHLIFSLASMYSAMLLTGWSTSVGESGKLVD 379
Query: 380 VGWPSVWVRIATQWATAGLYIWSLVAPLLFPDREF 414
VGWPSVWVRIATQWATAGLYIWSLVAPLLFPDREF
Sbjct: 380 VGWPSVWVRIATQWATAGLYIWSLVAPLLFPDREF 414
>Os03g0454100 TMS membrane protein/tumour differentially expressed protein family
protein
Length = 417
Score = 439 bits (1130), Expect = e-123, Method: Compositional matrix adjust.
Identities = 218/396 (55%), Positives = 269/396 (67%), Gaps = 2/396 (0%)
Query: 21 TAVGSIGRRSARIAYCGXXXXXXXXXXXXREVAAPLLQSIPWINHFHKTPDREWFETDAV 80
+A+ +I RRSAR+AYCG R+ A PLL+ IPWIN F T EWF+ +AV
Sbjct: 21 SALSAISRRSARLAYCGLFAASLILSFLMRQFATPLLKQIPWINTFDYTQPDEWFQMNAV 80
Query: 81 LRVSLGNFVFFTILAIIMAGIKDQKDPRDKIHHGGWMAKIFCWVVIVFLMFFVPNGVVSF 140
LRVSLGNF+FF I A++M G+KDQ D RD HHGGW+AKI WVV++ LMF VPN V++
Sbjct: 81 LRVSLGNFLFFAIFALMMIGVKDQNDRRDAWHHGGWIAKIVVWVVLIVLMFCVPNVVITI 140
Query: 141 YESISKFGSGXXXXXXXXXXXXXXHGWNENWVAKDEQFWYMALLVVSVVCYIVTFSFSGL 200
YE +SKFGSG + WN++W+ KDEQ W +ALLVV+VVCY+ TF+FSGL
Sbjct: 141 YEVLSKFGSGLFLLVQVVMLLDFTNNWNDSWIEKDEQKWEIALLVVTVVCYLSTFAFSGL 200
Query: 201 LFHWFTPSGHDCGXXXXXXXXXXXXXXXXXXXALHPKINGSLLPASVIALYCTYLCYSGL 260
LF WF PSGHDCG ALHP++NGS++PASVI++YC YLCY+ L
Sbjct: 201 LFTWFNPSGHDCGLNVFFITMTIILAFAFAIIALHPQVNGSVMPASVISVYCAYLCYTSL 260
Query: 261 SSEPRDYECNGLHNHSKAXXXXXXXXXXXXXXXXXXYSAVRAGSSATVLSAPDSPRAGAD 320
SSEP DY CNGLH HSK YSAVRAGSS T LS P SPR+G
Sbjct: 261 SSEPDDYACNGLHRHSKQVSMSALILGMLTTVLSVVYSAVRAGSSTTFLSPPSSPRSGIK 320
Query: 321 KPLL--PFSKADEEAEKKDVPRPVTYSYSFFHLIFSLASMYSAMLLTGWSTSVGESGKLV 378
PLL +A + K+ RPV+YSY+FFH+IF+LASMYSAMLLTGW+++ +S +L+
Sbjct: 321 NPLLGDDNVEAGKSNSKEIDARPVSYSYTFFHVIFALASMYSAMLLTGWTSAASDSSELM 380
Query: 379 DVGWPSVWVRIATQWATAGLYIWSLVAPLLFPDREF 414
DVGW +VWVRI T+WATA LYIW+LVAPLLFPDR+F
Sbjct: 381 DVGWTTVWVRICTEWATAALYIWTLVAPLLFPDRDF 416
>Os04g0506300 TMS membrane protein/tumour differentially expressed protein family
protein
Length = 404
Score = 143 bits (361), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 99/370 (26%), Positives = 161/370 (43%), Gaps = 36/370 (9%)
Query: 50 REVAAPLLQSIPWINHFHKTP-----DREWFETDAVLRVSLGNFVFFTILAIIMAGIKDQ 104
R+ A LL+ + H P D + F++ VLRVSLG F+FF ++ G +
Sbjct: 46 RDYGAKLLRGL------HHVPVCGAGDSKCFQSGGVLRVSLGCFIFFWVMFATTFGTRKL 99
Query: 105 KDPRDKIHHGGWMAKIFCWVVIVFLMFFVPNGVVSFYESISKFGSGXXXXXXXXXXXXXX 164
+ R+ H G W+ K + V + + F VPN + Y I++ G+G
Sbjct: 100 HEVRNSWHSGCWILKFLVYAVSIIIPFIVPNIFIQLYGEIARMGAGIFLILQLISMSHFI 159
Query: 165 HGWNENWVAKDEQFWYMAL--LVVSVVCYIVTFSFSGLLFHWFTPSGHDCGXXXXXXXXX 222
N+ W+ D Q L L +S + +I +F+ +L+ + P+ C
Sbjct: 160 SWCNKRWM-PDSQSNQCGLFGLFLSTISFIASFAGIAVLYVLYVPNS-SCAFNIFTITWT 217
Query: 223 XXXXXXXXXXALHPKINGSLLPASVIALYCTYLCYSGLSSEPRDYECNGLHNHSKAXXXX 282
+LH K+N LL + ++ LY +LC+S L SEP+ +C H++
Sbjct: 218 ATLVAVMMAVSLHSKVNEGLLSSGIMGLYIVFLCWSALHSEPQTGKC-----HTRLIFAN 272
Query: 283 XXXXXXXXXXXXXXYSAVRAGSSATVLSAPDSPRAGADKPLLPFSKADEEAEKKDVPRPV 342
+ V A S G D F + DE+ + DVP
Sbjct: 273 DGDWATIVSFIIAICAIVMATFS-----------TGIDTRSFQF-RNDEDQLEDDVP--- 317
Query: 343 TYSYSFFHLIFSLASMYSAMLLTGWSTSVGESGKLVDVGWPSVWVRIATQWATAGLYIWS 402
YSY FH++F++ +MY AML W + +DVGW S WV+I +W A +Y+W
Sbjct: 318 -YSYEIFHIVFAMGAMYFAMLFINWELNHPTRKWSIDVGWVSTWVKIINEWFAASIYVWR 376
Query: 403 LVAPLLFPDR 412
L++P++ +
Sbjct: 377 LISPVILRKQ 386
>Os01g0179800 TMS membrane protein/tumour differentially expressed protein family
protein
Length = 421
Score = 134 bits (338), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 85/333 (25%), Positives = 147/333 (44%), Gaps = 23/333 (6%)
Query: 78 DAVLRVSLGNFVFFTILAIIMAGIKDQKDPRDKIHHGGWMAKIFCWVVIVFLMFFVPNGV 137
+ VLRVSLG F+FF ++ + + D R+ H W AKI W+ + FF+P+ +
Sbjct: 97 EGVLRVSLGCFLFFFVMFLSTVRTRKTHDRRNSWHSEWWPAKIVLWMGFTVVPFFLPSPL 156
Query: 138 VSFYESISKFGSGXXXXXXXXXXXXXXHGWNENWVAKDE-QFWYMALLVVSVVCYIVTFS 196
+ Y I+ FG+G N+ ++ + +M + VVS+ Y+ +
Sbjct: 157 IQLYGKIAHFGAGAFLVIQLVSVTRFITWLNDCCRSETNLKRCHMQVQVVSIAAYVGSIL 216
Query: 197 FSGLLFHWFTPSGHDCGXXXXXXXXXXXXXXXXXXXALHPKINGSLLPASVIALYCTYLC 256
L++ W+ P C +L K+ L ++ +Y +LC
Sbjct: 217 GVVLMYVWYAPR-PSCKLNILFITVTLVLVQIMTGVSLSSKVKAGYLAPGLMGVYIVFLC 275
Query: 257 YSGLSSEPRDYECNGLHNHSKAXXXXXXXXXXXXXXXXXXYSAVRAGSSATVLSAPDSPR 316
++ + SEP CN + + + + + A ++ +
Sbjct: 276 WTAIRSEPHTEICNKKAEVATSAD----------------WVNIASFVIAVIVIVTATFA 319
Query: 317 AGADKPLLPFSKAD-EEAEKKDVPRPVTYSYSFFHLIFSLASMYSAMLLTGWSTSVGESG 375
G D L F KA+ E+ E D+P Y + FFH +F++ +MY AML GW+ +
Sbjct: 320 TGIDSKCLQFKKAESEQPEDDDIP----YGFGFFHFVFAMGAMYFAMLFVGWNANQTMEK 375
Query: 376 KLVDVGWPSVWVRIATQWATAGLYIWSLVAPLL 408
+DVGW S WVR+ +W A +YIW ++AP++
Sbjct: 376 WTIDVGWASTWVRVVNEWLAAIVYIWMVIAPIV 408
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.138 0.459
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,936,771
Number of extensions: 427656
Number of successful extensions: 1157
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1149
Number of HSP's successfully gapped: 6
Length of query: 414
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 311
Effective length of database: 11,657,759
Effective search space: 3625563049
Effective search space used: 3625563049
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 157 (65.1 bits)