Os03g0454100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : TMS membrane protein/tumour differentially expressed protein family protein.
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Os03g0454100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : TMS membrane protein/tumour differentially expressed protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 12.58 | 0.167 | 11.7 | 0.0601 | 0.105 | -0.662 | 0.274 | 0.484 | 0.0266 | 2.68 | 50.07 | 261 | -- | -- |
| 12.6 | 0.165 | 11.7 | 0.0719 | 0.1 | -0.614 | 0.281 | -- | 0.0258 | 2.46 | 50 | 234 | -- | -- |
| 12.82 | 0.167 | 11.7 | 0.0527 | 0.104 | -0.658 | -- | 0.666 | 0.023 | 2.7 | 50 | 245 | -- | -- |
| 12.88 | 0.167 | 11.7 | 0.0677 | 0.101 | -0.583 | -- | -- | 0.022 | 2.58 | 49.74 | 234 | -- | -- |
| 13.39 | 0.17 | 11.7 | 0.061 | -- | -0.667 | -- | 0.766 | 0.0239 | -- | 49.71 | 236 | -- | -- |
| 14.4 | 0.178 | 11.7 | 0.119 | 0.0778 | -- | 0.195 | -- | 0.00858 | 23.7 | -- | -- | -- | -- |
| 14.57 | 0.179 | 11.7 | 0.111 | 0.077 | -- | -- | -- | 0.00763 | 24 | -- | -- | -- | -- |
| 13.46 | 0.171 | 11.7 | 0.0731 | -- | -0.524 | -- | -- | 0.0246 | -- | 49.98 | 243 | -- | -- |
| 13 | 0.168 | 11.7 | -- | 0.105 | -0.609 | -- | -- | 0.0155 | 2.67 | 49.41 | 234 | -- | -- |
| 14.94 | 0.181 | 11.7 | 0.114 | -- | -- | -- | -- | 0.00869 | -- | -- | -- | -- | -- |
| 14.89 | 0.181 | 11.7 | -- | 0.0785 | -- | -- | -- | -0.00476 | 0.0564 | -- | -- | -- | -- |
| 13.61 | 0.172 | 11.7 | -- | -- | -0.542 | -- | -- | 0.0152 | -- | 49.27 | 248 | -- | -- |
| 15.28 | 0.182 | 11.7 | -- | -- | -- | -- | -- | -0.00391 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 12.38 | humidity | 50 | 270 | > th | dose independent | rect. | 16 | 23 |
| 2 | 12.50 | humidity | 50 | 270 | < th | dose independent | rect. | 12 | 5 |
| 20 | 12.51 | humidity | 50 | 270 | > th | dose independent | rect. | 6 | 23 |
| 22 | 12.51 | humidity | 50 | 270 | < th | dose dependent | rect. | 12 | 5 |
| 41 | 12.53 | humidity | 50 | 270 | > th | dose independent | sin | 15 | NA |
| 44 | 12.54 | humidity | 50 | 270 | < th | dose independent | sin | 16 | NA |
| 89 | 12.55 | humidity | 50 | 270 | < th | dose dependent | sin | 17 | NA |
| 154 | 12.58 | humidity | 50 | 270 | > th | dose independent | sin | 23 | NA |
| 155 | 12.58 | humidity | 50 | 270 | > th | dose independent | no | NA | NA |
| 156 | 12.58 | humidity | 50 | 270 | < th | dose independent | no | NA | NA |
| 304 | 12.59 | humidity | 50 | 270 | < th | dose dependent | no | NA | NA |
| 460 | 12.60 | humidity | 50 | 270 | > th | dose independent | rect. | 18 | 23 |
| 495 | 12.61 | humidity | 50 | 270 | > th | dose independent | rect. | 8 | 14 |
| 496 | 12.61 | humidity | 50 | 270 | < th | dose independent | rect. | 15 | 23 |
| 502 | 12.61 | humidity | 50 | 270 | < th | dose dependent | rect. | 15 | 23 |
| 828 | 12.75 | humidity | 60 | 270 | > th | dose independent | rect. | 9 | 17 |
| 857 | 12.77 | humidity | 50 | 90 | > th | dose independent | rect. | 9 | 8 |
| 858 | 12.77 | humidity | 60 | 270 | > th | dose independent | rect. | 7 | 20 |