Os02g0792900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : TMS membrane protein/tumour differentially expressed protein family protein.
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Os02g0792900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : TMS membrane protein/tumour differentially expressed protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 15 | 0.182 | 14.5 | 0.42 | 0.207 | -0.15 | 0.134 | -0.518 | 0.232 | 23.6 | 60.06 | 4351 | -- | -- |
| 15.37 | 0.183 | 14.5 | 0.441 | 0.207 | -0.173 | 0.133 | -- | 0.243 | 23.6 | 61.52 | 4164 | -- | -- |
| 15.06 | 0.181 | 14.5 | 0.412 | 0.201 | -0.143 | -- | -0.544 | 0.231 | 23.6 | 59.97 | 4168 | -- | -- |
| 15.3 | 0.182 | 14.5 | 0.448 | 0.214 | -0.205 | -- | -- | 0.247 | 24 | 62 | 4753 | -- | -- |
| 17.48 | 0.195 | 14.5 | 0.407 | -- | -0.189 | -- | -0.612 | 0.243 | -- | 59.04 | 3865 | -- | -- |
| 15.94 | 0.187 | 14.5 | 0.448 | 0.211 | -- | 0.151 | -- | 0.207 | 23.7 | -- | -- | -- | -- |
| 16.04 | 0.188 | 14.5 | 0.442 | 0.21 | -- | -- | -- | 0.206 | 23.7 | -- | -- | -- | -- |
| 17.78 | 0.196 | 14.5 | 0.445 | -- | -0.241 | -- | -- | 0.279 | -- | 62.3 | 3936 | -- | -- |
| 20.47 | 0.211 | 14.5 | -- | 0.206 | -0.203 | -- | -- | 0.211 | 23.7 | 62 | 4071 | -- | -- |
| 18.82 | 0.203 | 14.5 | 0.448 | -- | -- | -- | -- | 0.209 | -- | -- | -- | -- | -- |
| 21.18 | 0.215 | 14.5 | -- | 0.216 | -- | -- | -- | 0.157 | 23.9 | -- | -- | -- | -- |
| 21.5 | 0.216 | 14.4 | -- | -- | -0.385 | -- | -- | 0.246 | -- | 51.99 | 3966 | -- | -- |
| 24.11 | 0.229 | 14.5 | -- | -- | -- | -- | -- | 0.159 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 14.43 | temperature | 25 | 270 | > th | dose independent | rect. | 17 | 14 |
| 4 | 14.49 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 14 |
| 5 | 14.51 | temperature | 25 | 270 | > th | dose dependent | rect. | 20 | 11 |
| 8 | 14.52 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 8 |
| 15 | 14.53 | temperature | 25 | 720 | > th | dose dependent | sin | 13 | NA |
| 17 | 14.55 | temperature | 25 | 720 | > th | dose independent | rect. | 16 | 9 |
| 19 | 14.55 | temperature | 25 | 720 | > th | dose dependent | rect. | 22 | 1 |
| 28 | 14.57 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 4 |
| 90 | 14.67 | temperature | 25 | 270 | > th | dose independent | sin | 12 | NA |
| 94 | 14.67 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 109 | 14.70 | temperature | 25 | 720 | > th | dose independent | sin | 14 | NA |
| 221 | 14.84 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 1 |
| 233 | 14.85 | temperature | 25 | 90 | < th | dose independent | rect. | 16 | 15 |
| 240 | 14.86 | humidity | 60 | 4320 | < th | dose independent | rect. | 14 | 1 |
| 249 | 14.87 | humidity | 60 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 260 | 14.88 | humidity | 60 | 4320 | > th | dose independent | rect. | 14 | 1 |
| 276 | 14.89 | temperature | 25 | 720 | > th | dose independent | rect. | 22 | 1 |
| 280 | 14.89 | humidity | 60 | 4320 | < th | dose independent | rect. | 8 | 7 |
| 302 | 14.90 | humidity | 60 | 4320 | < th | dose independent | rect. | 11 | 4 |
| 305 | 14.90 | wind | 1 | 720 | < th | dose independent | rect. | 8 | 7 |
| 307 | 14.90 | humidity | 60 | 4320 | > th | dose independent | rect. | 8 | 7 |
| 326 | 14.90 | temperature | 20 | 10 | > th | dose dependent | rect. | 22 | 5 |
| 333 | 14.91 | humidity | 60 | 4320 | > th | dose independent | rect. | 10 | 5 |
| 345 | 14.92 | temperature | 25 | 720 | < th | dose independent | rect. | 16 | 6 |
| 393 | 14.94 | humidity | 60 | 4320 | > th | dose independent | sin | 4 | NA |
| 450 | 14.95 | temperature | 25 | 10 | > th | dose independent | rect. | 17 | 11 |
| 470 | 14.96 | humidity | 60 | 4320 | < th | dose independent | sin | 3 | NA |
| 479 | 14.96 | temperature | 25 | 10 | > th | dose independent | rect. | 17 | 9 |
| 493 | 14.97 | humidity | 60 | 4320 | > th | dose independent | sin | 0 | NA |
| 495 | 14.97 | humidity | 60 | 4320 | < th | dose independent | sin | 1 | NA |
| 498 | 14.97 | temperature | 25 | 720 | > th | dose independent | rect. | 20 | 1 |
| 542 | 14.97 | wind | 1 | 720 | < th | dose dependent | rect. | 8 | 7 |
| 578 | 14.99 | humidity | 60 | 4320 | < th | dose independent | sin | 22 | NA |
| 599 | 14.99 | wind | 1 | 30 | > th | dose independent | rect. | 1 | 23 |
| 600 | 14.99 | humidity | 60 | 4320 | > th | dose independent | rect. | 11 | 23 |
| 602 | 14.99 | humidity | 60 | 4320 | < th | dose independent | rect. | 11 | 23 |
| 609 | 15.00 | humidity | 60 | 4320 | > th | dose independent | no | NA | NA |
| 612 | 15.00 | humidity | 60 | 4320 | < th | dose independent | no | NA | NA |
| 838 | 15.01 | temperature | 30 | 1440 | > th | dose independent | rect. | 13 | 2 |
| 857 | 15.01 | wind | 1 | 720 | < th | dose independent | rect. | 8 | 11 |
| 896 | 15.01 | humidity | 60 | 4320 | > th | dose independent | rect. | 13 | 23 |
| 900 | 15.02 | temperature | 25 | 90 | < th | dose independent | sin | 13 | NA |
| 986 | 15.02 | wind | 1 | 270 | < th | dose dependent | rect. | 9 | 14 |