Os04g0506300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : TMS membrane protein/tumour differentially expressed protein family protein.
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Os04g0506300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : TMS membrane protein/tumour differentially expressed protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 337.93 | 0.864 | 3.02 | 0.221 | 0.0835 | -0.623 | 0.426 | -1.3 | -0.0166 | 15.2 | 1015 | 4810 | -- | -- |
| 344.66 | 0.865 | 3.01 | 0.484 | 0.0738 | -0.7 | 0.456 | -- | 0.0495 | 15.2 | 1014 | 4834 | -- | -- |
| 338.43 | 0.857 | 3.03 | 0.232 | 0.078 | -0.612 | -- | -1.31 | -0.0184 | 13.5 | 1015 | 4813 | -- | -- |
| 345.27 | 0.865 | 3 | 0.492 | 0.0855 | -0.692 | -- | -- | 0.0463 | 13.1 | 1014 | 4834 | -- | -- |
| 338.94 | 0.857 | 3.03 | 0.231 | -- | -0.613 | -- | -1.31 | -0.0188 | -- | 1015 | 4810 | -- | -- |
| 362.06 | 0.892 | 3.03 | 0.434 | 0.0833 | -- | 0.44 | -- | -0.063 | 15.8 | -- | -- | -- | -- |
| 362.5 | 0.892 | 3.03 | 0.44 | 0.0944 | -- | -- | -- | -0.0607 | 13.8 | -- | -- | -- | -- |
| 345.74 | 0.866 | 3.01 | 0.491 | -- | -0.696 | -- | -- | 0.0464 | -- | 1014 | 4834 | -- | -- |
| 351.59 | 0.873 | 3.01 | -- | 0.0771 | -0.699 | -- | -- | -0.00816 | 12.5 | 1014 | 4595 | -- | -- |
| 363.04 | 0.89 | 3.03 | 0.436 | -- | -- | -- | -- | -0.0628 | -- | -- | -- | -- | -- |
| 367.61 | 0.897 | 3.04 | -- | 0.0864 | -- | -- | -- | -0.11 | 13.6 | -- | -- | -- | -- |
| 351.88 | 0.874 | 3.02 | -- | -- | -0.704 | -- | -- | -0.0144 | -- | 1014 | 4600 | -- | -- |
| 368.06 | 0.895 | 3.04 | -- | -- | -- | -- | -- | -0.111 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 328.10 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 17 | 1 |
| 29 | 328.10 | precipitation | 0.1 | 10 | > th | dose dependent | rect. | 17 | 1 |
| 83 | 333.90 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 85 | 333.95 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 89 | 333.98 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 169 | 336.17 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 6 | 14 |
| 182 | 336.30 | humidity | 90.0 | 10 | > th | dose independent | rect. | 17 | 1 |
| 192 | 336.30 | humidity | 90.0 | 10 | > th | dose dependent | rect. | 17 | 1 |
| 230 | 336.58 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 236 | 336.60 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 13 | 5 |
| 255 | 336.68 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 14 | 3 |
| 317 | 336.82 | atmosphere | 1015.0 | 4320 | > th | dose dependent | sin | 1 | NA |
| 335 | 336.90 | atmosphere | 1010.0 | 270 | > th | dose dependent | rect. | 6 | 1 |
| 363 | 336.98 | humidity | 70.0 | 90 | < th | dose independent | rect. | 8 | 1 |
| 467 | 337.42 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 468 | 337.42 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 14 | 3 |
| 496 | 337.52 | atmosphere | 1015.0 | 4320 | > th | dose independent | sin | 1 | NA |
| 499 | 337.52 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 12 | 5 |
| 519 | 337.58 | atmosphere | 1015.0 | 4320 | < th | dose independent | sin | 1 | NA |
| 532 | 337.63 | atmosphere | 1010.0 | 270 | > th | dose independent | rect. | 5 | 1 |
| 548 | 337.64 | atmosphere | 1010.0 | 90 | > th | dose dependent | rect. | 8 | 1 |
| 610 | 337.76 | humidity | 50.0 | 4320 | < th | dose dependent | rect. | 14 | 2 |
| 613 | 337.78 | humidity | 70.0 | 4320 | < th | dose independent | rect. | 8 | 1 |
| 614 | 337.78 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 19 | 1 |
| 616 | 337.78 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 24 | 12 |
| 670 | 338.06 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 22 | 11 |
| 674 | 338.08 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 5 | 4 |
| 675 | 338.08 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 2 | 7 |
| 676 | 338.08 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 24 | 9 |
| 859 | 338.84 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 5 | 1 |