Os01g0179800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : TMS membrane protein/tumour differentially expressed protein family protein.
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Os01g0179800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : TMS membrane protein/tumour differentially expressed protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 198.6 | 0.662 | 11 | -1.3 | 4.91 | -1.41 | 1.83 | 1.15 | -0.237 | 7.06 | 20.44 | 115 | 13.7 | 19.3 |
| 200.38 | 0.659 | 11 | -1.47 | 4.92 | -1.59 | 1.21 | -- | -0.268 | 6.91 | 20.4 | 204 | 13.4 | 19.1 |
| 202.82 | 0.663 | 10.9 | -1.37 | 4.92 | -1.52 | -- | 0.565 | -0.245 | 6.97 | 20.5 | 189 | 13.4 | 19.2 |
| 204.18 | 0.666 | 11 | -1.45 | 4.89 | -1.59 | -- | -- | -0.279 | 6.92 | 20.4 | 212 | 13.2 | 19.3 |
| 942.82 | 1.43 | 11.2 | -1.12 | -- | -3.33 | -- | 3.86 | 0.138 | -- | 25.3 | 124 | 14.1 | 15.3 |
| 333.9 | 0.857 | 11 | -1.85 | 5.24 | -- | 1.61 | -- | -0.664 | 7.64 | -- | -- | -- | -- |
| 341.25 | 0.865 | 11 | -1.81 | 5.24 | -- | -- | -- | -0.667 | 7.64 | -- | -- | -- | -- |
| 786.58 | 1.31 | 10.9 | -1.13 | -- | -3.89 | -- | -- | 0.714 | -- | 25.32 | 277 | 12.4 | 16.7 |
| 256.44 | 0.746 | 11 | -- | 4.84 | -1.91 | -- | -- | -0.0669 | 6.91 | 20.2 | 234 | 12.8 | 19.7 |
| 1816.06 | 1.99 | 11.2 | -1.74 | -- | -- | -- | -- | -0.588 | -- | -- | -- | -- | -- |
| 427.78 | 0.968 | 11 | -- | 5.22 | -- | -- | -- | -0.465 | 7.66 | -- | -- | -- | -- |
| 378.75 | 0.906 | 11 | -- | -- | -5.23 | -- | -- | -0.0181 | -- | 20.38 | 541 | 9.78 | 11.7 |
| 1895.94 | 2.03 | 11.1 | -- | -- | -- | -- | -- | -0.395 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 201.85 | temperature | 20 | 90 | > th | dose independent | rect. | 14 | 19 |
| 2 | 202.18 | temperature | 20 | 270 | > th | dose independent | rect. | 12 | 20 |
| 8 | 210.57 | temperature | 20 | 10 | > th | dose independent | rect. | 14 | 20 |
| 22 | 216.51 | temperature | 10 | 270 | > th | dose dependent | rect. | 12 | 21 |
| 72 | 230.39 | temperature | 15 | 10 | > th | dose dependent | rect. | 14 | 20 |
| 120 | 237.61 | temperature | 20 | 4320 | > th | dose independent | rect. | 19 | 4 |
| 129 | 238.87 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 131 | 238.96 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 20 |
| 146 | 239.81 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 4 |
| 157 | 240.21 | temperature | 25 | 1440 | < th | dose dependent | rect. | 2 | 2 |
| 167 | 240.78 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 7 |
| 168 | 240.80 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 7 |
| 172 | 241.04 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 180 | 241.35 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 11 |
| 182 | 241.39 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 8 |
| 186 | 241.42 | temperature | 20 | 1440 | > th | dose dependent | rect. | 7 | 1 |
| 190 | 241.58 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 11 |
| 200 | 241.80 | temperature | 15 | 1440 | > th | dose dependent | rect. | 2 | 2 |
| 201 | 241.81 | temperature | 30 | 1440 | < th | dose dependent | rect. | 2 | 7 |
| 238 | 242.29 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 3 |
| 315 | 243.09 | temperature | 20 | 270 | > th | dose independent | rect. | 12 | 11 |
| 327 | 243.21 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 3 |
| 336 | 243.32 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 3 |
| 379 | 243.59 | temperature | 20 | 1440 | > th | dose independent | sin | 11 | NA |
| 446 | 244.04 | temperature | 20 | 1440 | < th | dose independent | sin | 11 | NA |
| 465 | 244.13 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 3 |
| 520 | 244.43 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 565 | 244.67 | temperature | 30 | 270 | < th | dose dependent | rect. | 17 | 10 |
| 593 | 244.84 | temperature | 15 | 1440 | > th | dose dependent | sin | 10 | NA |
| 594 | 244.85 | temperature | 15 | 1440 | > th | dose dependent | rect. | 22 | 6 |
| 681 | 245.42 | temperature | 30 | 1440 | < th | dose dependent | sin | 10 | NA |
| 941 | 247.16 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |