BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0179800 Os01g0179800|AK069734
(421 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0179800 TMS membrane protein/tumour differentially exp... 749 0.0
Os04g0506300 TMS membrane protein/tumour differentially exp... 333 2e-91
Os03g0454100 TMS membrane protein/tumour differentially exp... 173 2e-43
Os02g0792900 TMS membrane protein/tumour differentially exp... 159 4e-39
>Os01g0179800 TMS membrane protein/tumour differentially expressed protein family
protein
Length = 421
Score = 749 bits (1933), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/382 (95%), Positives = 364/382 (95%)
Query: 40 QLVVGPPNPMMARYVYAFVFLATNLLAWTLRDFGHPVLAELRRLRGSCQGAGYCLGAEGV 99
QLVVGPPNPMMARYVYAFVFLATNLLAWTLRDFGHPVLAELRRLRGSCQGAGYCLGAEGV
Sbjct: 40 QLVVGPPNPMMARYVYAFVFLATNLLAWTLRDFGHPVLAELRRLRGSCQGAGYCLGAEGV 99
Query: 100 LRVSLGCFLFFFVMFLSTVRTRKTHDRRNSWHSEWWPAKIVLWMGFTVVPFFLPSPLIQL 159
LRVSLGCFLFFFVMFLSTVRTRKTHDRRNSWHSEWWPAKIVLWMGFTVVPFFLPSPLIQL
Sbjct: 100 LRVSLGCFLFFFVMFLSTVRTRKTHDRRNSWHSEWWPAKIVLWMGFTVVPFFLPSPLIQL 159
Query: 160 YGKIAHFGAGAFLVIQLVSVTRFITWLNDCCRSETNLKRCHMQVQVVSIAAYVGSILGVV 219
YGKIAHFGAGAFLVIQLVSVTRFITWLNDCCRSETNLKRCHMQVQVVSIAAYVGSILGVV
Sbjct: 160 YGKIAHFGAGAFLVIQLVSVTRFITWLNDCCRSETNLKRCHMQVQVVSIAAYVGSILGVV 219
Query: 220 LMYVWYAPRPSCKLNILFITVTLVLVQIMTGVSLSSKVKAGYLAPGLMGVYIVFLCWTAI 279
LMYVWYAPRPSCKLNILFITVTLVLVQIMTGVSLSSKVKAGYLAPGLMGVYIVFLCWTAI
Sbjct: 220 LMYVWYAPRPSCKLNILFITVTLVLVQIMTGVSLSSKVKAGYLAPGLMGVYIVFLCWTAI 279
Query: 280 RSEPHTEICNKKAEVATSADWVNXXXXXXXXXXXXXXXXXXGIDSKCLQFKKAESEQPED 339
RSEPHTEICNKKAEVATSADWVN GIDSKCLQFKKAESEQPED
Sbjct: 280 RSEPHTEICNKKAEVATSADWVNIASFVIAVIVIVTATFATGIDSKCLQFKKAESEQPED 339
Query: 340 DDIPYGFGFFHFVFAMGAMYFAMLFVGWNANQTMEKWTIDVGWASTWVRVVNEWLAAIVY 399
DDIPYGFGFFHFVFAMGAMYFAMLFVGWNANQTMEKWTIDVGWASTWVRVVNEWLAAIVY
Sbjct: 340 DDIPYGFGFFHFVFAMGAMYFAMLFVGWNANQTMEKWTIDVGWASTWVRVVNEWLAAIVY 399
Query: 400 IWMVIAPIVWKGGQVGSSPEGT 421
IWMVIAPIVWKGGQVGSSPEGT
Sbjct: 400 IWMVIAPIVWKGGQVGSSPEGT 421
>Os04g0506300 TMS membrane protein/tumour differentially expressed protein family
protein
Length = 404
Score = 333 bits (853), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 160/365 (43%), Positives = 224/365 (61%), Gaps = 3/365 (0%)
Query: 55 YAFVFLATNLLAWTLRDFGHPVLAELRRLRGSCQGAGYCLGAEGVLRVSLGCFLFFFVMF 114
Y +F ATNLLAW +RD+G +L L + G C + GVLRVSLGCF+FF+VMF
Sbjct: 31 YGLIFFATNLLAWFVRDYGAKLLRGLHHVPVCGAGDSKCFQSGGVLRVSLGCFIFFWVMF 90
Query: 115 LSTVRTRKTHDRRNSWHSEWWPAKIVLWMGFTVVPFFLPSPLIQLYGKIAHFGAGAFLVI 174
+T TRK H+ RNSWHS W K +++ ++PF +P+ IQLYG+IA GAG FL++
Sbjct: 91 ATTFGTRKLHEVRNSWHSGCWILKFLVYAVSIIIPFIVPNIFIQLYGEIARMGAGIFLIL 150
Query: 175 QLVSVTRFITWLNDCCRSETNLKRCHMQVQVVSIAAYVGSILGVVLMYVWYAPRPSCKLN 234
QL+S++ FI+W N ++ +C + +S +++ S G+ ++YV Y P SC N
Sbjct: 151 QLISMSHFISWCNKRWMPDSQSNQCGLFGLFLSTISFIASFAGIAVLYVLYVPNSSCAFN 210
Query: 235 ILFITVTLVLVQIMTGVSLSSKVKAGYLAPGLMGVYIVFLCWTAIRSEPHTEICNKKAEV 294
I IT T LV +M VSL SKV G L+ G+MG+YIVFLCW+A+ SEP T C+ +
Sbjct: 211 IFTITWTATLVAVMMAVSLHSKVNEGLLSSGIMGLYIVFLCWSALHSEPQTGKCHTRLIF 270
Query: 295 ATSADWVNXXXXXXXXXXXXXXXXXXGIDSKCLQFKKAESEQPEDDDIPYGFGFFHFVFA 354
A DW GID++ QF+ E + +DD+PY + FH VFA
Sbjct: 271 ANDGDWATIVSFIIAICAIVMATFSTGIDTRSFQFRNDEDQL--EDDVPYSYEIFHIVFA 328
Query: 355 MGAMYFAMLFVGWNANQTMEKWTIDVGWASTWVRVVNEWLAAIVYIWMVIAPIVWKGGQV 414
MGAMYFAMLF+ W N KW+IDVGW STWV+++NEW AA +Y+W +I+P++ + Q
Sbjct: 329 MGAMYFAMLFINWELNHPTRKWSIDVGWVSTWVKIINEWFAASIYVWRLISPVILR-KQA 387
Query: 415 GSSPE 419
++ E
Sbjct: 388 ANNEE 392
>Os03g0454100 TMS membrane protein/tumour differentially expressed protein family
protein
Length = 417
Score = 173 bits (438), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 111/382 (29%), Positives = 192/382 (50%), Gaps = 24/382 (6%)
Query: 51 ARYVYAFVFLATNLLAWTLRDFGHPVLAELRRLRG-SCQGAGYCLGAEGVLRVSLGCFLF 109
AR Y +F A+ +L++ +R F P+L ++ + VLRVSLG FLF
Sbjct: 31 ARLAYCGLFAASLILSFLMRQFATPLLKQIPWINTFDYTQPDEWFQMNAVLRVSLGNFLF 90
Query: 110 FFVMFLSTVRTRKTHDRRNSWHSEWWPAKIVLWMGFTVVPFFLPSPLIQLYGKIAHFGAG 169
F + L + + +DRR++WH W AKIV+W+ V+ F +P+ +I +Y ++ FG+G
Sbjct: 91 FAIFALMMIGVKDQNDRRDAWHHGGWIAKIVVWVVLIVLMFCVPNVVITIYEVLSKFGSG 150
Query: 170 AFLVIQLVSVTRFITWLNDCCRSETNLKRCHMQVQVVSIAAYVGSILGVVLMYVWYAPR- 228
FL++Q+V + F ND E + ++ + + VV++ Y+ + L++ W+ P
Sbjct: 151 LFLLVQVVMLLDFTNNWND-SWIEKDEQKWEIALLVVTVVCYLSTFAFSGLLFTWFNPSG 209
Query: 229 PSCKLNILFITVTLVLVQIMTGVSLSSKVKAGYLAPGLMGVYIVFLCWTAIRSEPHTEIC 288
C LN+ FIT+T++L ++L +V + ++ VY +LC+T++ SEP C
Sbjct: 210 HDCGLNVFFITMTIILAFAFAIIALHPQVNGSVMPASVISVYCAYLCYTSLSSEPDDYAC 269
Query: 289 N----KKAEVATSADWVNXXXXXXXXXXXXXXXXX------------XGIDSKCL----- 327
N +V+ SA + GI + L
Sbjct: 270 NGLHRHSKQVSMSALILGMLTTVLSVVYSAVRAGSSTTFLSPPSSPRSGIKNPLLGDDNV 329
Query: 328 QFKKAESEQPEDDDIPYGFGFFHFVFAMGAMYFAMLFVGWNANQTMEKWTIDVGWASTWV 387
+ K+ S++ + + Y + FFH +FA+ +MY AML GW + + +DVGW + WV
Sbjct: 330 EAGKSNSKEIDARPVSYSYTFFHVIFALASMYSAMLLTGWTSAASDSSELMDVGWTTVWV 389
Query: 388 RVVNEWLAAIVYIWMVIAPIVW 409
R+ EW A +YIW ++AP+++
Sbjct: 390 RICTEWATAALYIWTLVAPLLF 411
>Os02g0792900 TMS membrane protein/tumour differentially expressed protein family
protein
Length = 414
Score = 159 bits (401), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 111/391 (28%), Positives = 185/391 (47%), Gaps = 24/391 (6%)
Query: 40 QLVVGPPNPMMARYVYAFVFLATNLLAWTLRDFGHPVLAELRRLRGSCQGAGYC-LGAEG 98
+ VG AR Y +F + +W LR+ P+L + + + +
Sbjct: 20 RTAVGSIGRRSARIAYCGLFALSLFASWALREVAAPLLQSIPWINHFHKTPDREWFETDA 79
Query: 99 VLRVSLGCFLFFFVMFLSTVRTRKTHDRRNSWHSEWWPAKIVLWMGFTVVPFFLPSPLIQ 158
VLRVSLG F+FF ++ + + D R+ H W AKI W+ + FF+P+ ++
Sbjct: 80 VLRVSLGNFVFFTILAIIMAGIKDQKDPRDKIHHGGWMAKIFCWVVIVFLMFFVPNGVVS 139
Query: 159 LYGKIAHFGAGAFLVIQLVSVTRFITWLNDCCRSETNLKRCHMQVQVVSIAAYVGSILGV 218
Y I+ FG+G FL++Q+V + F+ N+ ++ + +M + VVS+ Y+ +
Sbjct: 140 FYESISKFGSGLFLLVQVVLLLDFVHGWNENWVAKDE-QFWYMALLVVSVVCYIVTFSFS 198
Query: 219 VLMYVWYAPR-PSCKLNILFITVTLVLVQIMTGVSLSSKVKAGYLAPGLMGVYIVFLCWT 277
L++ W+ P C +N+ FI TL+LV + V+L K+ L ++ +Y +LC++
Sbjct: 199 GLLFHWFTPSGHDCGINLFFIVFTLILVFVFAIVALHPKINGSLLPASVIALYCTYLCYS 258
Query: 278 AIRSEPHTEIC----NKKAEVAT------------SADWVNXXXXXXXXXXXXXXXXXXG 321
+ SEP C N V+T S + G
Sbjct: 259 GLSSEPRDYECNGLHNHSKAVSTGSLSLGLLTTILSVVYSAVRAGSSATVLSAPDSPRAG 318
Query: 322 IDSKCLQFKKAESEQPEDDDIP----YGFGFFHFVFAMGAMYFAMLFVGWNANQTMEKWT 377
D L F KA+ E+ E D+P Y + FFH +F++ +MY AML GW+ +
Sbjct: 319 ADKPLLPFSKAD-EEAEKKDVPRPVTYSYSFFHLIFSLASMYSAMLLTGWSTSVGESGKL 377
Query: 378 IDVGWASTWVRVVNEWLAAIVYIWMVIAPIV 408
+DVGW S WVR+ +W A +YIW ++AP++
Sbjct: 378 VDVGWPSVWVRIATQWATAGLYIWSLVAPLL 408
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.328 0.140 0.470
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,107,496
Number of extensions: 502572
Number of successful extensions: 1146
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1138
Number of HSP's successfully gapped: 6
Length of query: 421
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 317
Effective length of database: 11,605,545
Effective search space: 3678957765
Effective search space used: 3678957765
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 157 (65.1 bits)