BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0791800 Os02g0791800|AK099697
         (374 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0791800  WD-40 repeat containing protein                     723   0.0  
Os01g0168500  WD40-like domain containing protein                 124   1e-28
Os01g0934000  WD40-like domain containing protein                 123   2e-28
Os05g0169200  WD40-like domain containing protein                 116   2e-26

>Os02g0791800 WD-40 repeat containing protein
          Length = 374

 Score =  723 bits (1865), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/374 (93%), Positives = 350/374 (93%)

Query: 1   MAXXXXXXXXXQIRCASFNQDNSLFYVGTKDGFRIFDAHTGKLHYQKNIGGIGNMEMYFR 60
           MA         QIRCASFNQDNSLFYVGTKDGFRIFDAHTGKLHYQKNIGGIGNMEMYFR
Sbjct: 1   MASSSSPPPPPQIRCASFNQDNSLFYVGTKDGFRIFDAHTGKLHYQKNIGGIGNMEMYFR 60

Query: 61  TNILAIVGTGEQPVLSPRCLRLIDTVAAVTKKDLNFKTSXXXXXXXXXXXXXXXQDRTFI 120
           TNILAIVGTGEQPVLSPRCLRLIDTVAAVTKKDLNFKTS               QDRTFI
Sbjct: 61  TNILAIVGTGEQPVLSPRCLRLIDTVAAVTKKDLNFKTSVLAVRLSRTRLVVVLQDRTFI 120

Query: 121 YDVNSTTILEEIETVPNTKGLCAFAPNSEACYLAIPASTSKGSALVYKASEPELICQIDA 180
           YDVNSTTILEEIETVPNTKGLCAFAPNSEACYLAIPASTSKGSALVYKASEPELICQIDA
Sbjct: 121 YDVNSTTILEEIETVPNTKGLCAFAPNSEACYLAIPASTSKGSALVYKASEPELICQIDA 180

Query: 181 HESPLAAMAFSSNGTYLATASGKGTIIRVFLVAQATKSHSFRRGTYPSTIYSLSFGPSDD 240
           HESPLAAMAFSSNGTYLATASGKGTIIRVFLVAQATKSHSFRRGTYPSTIYSLSFGPSDD
Sbjct: 181 HESPLAAMAFSSNGTYLATASGKGTIIRVFLVAQATKSHSFRRGTYPSTIYSLSFGPSDD 240

Query: 241 LPDVLVATSSSGSLHMFFLDAARNRRNQTSKLLGSMIPGAITRALDPANHHIIHNVIPAG 300
           LPDVLVATSSSGSLHMFFLDAARNRRNQTSKLLGSMIPGAITRALDPANHHIIHNVIPAG
Sbjct: 241 LPDVLVATSSSGSLHMFFLDAARNRRNQTSKLLGSMIPGAITRALDPANHHIIHNVIPAG 300

Query: 301 IKSCVAVHKVENSQNSSKLPALRTVVYIITHDGYFREYSINTTKSNESSWVLQRELNLLD 360
           IKSCVAVHKVENSQNSSKLPALRTVVYIITHDGYFREYSINTTKSNESSWVLQRELNLLD
Sbjct: 301 IKSCVAVHKVENSQNSSKLPALRTVVYIITHDGYFREYSINTTKSNESSWVLQRELNLLD 360

Query: 361 TGCSTPQREEQHKD 374
           TGCSTPQREEQHKD
Sbjct: 361 TGCSTPQREEQHKD 374



>Os01g0168500 WD40-like domain containing protein
          Length = 417

 Score =  124 bits (310), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 82/263 (31%), Positives = 128/263 (48%), Gaps = 10/263 (3%)

Query: 17  SFNQDNSLFYVGTKDGFRIFDAHTGKLHYQKNI--GGIGNMEMYFRTNILAIVGTGEQPV 74
           S+NQD   F  GT +GFRIF+    K  +++++  GG G +EM FR NILA+VG G    
Sbjct: 51  SWNQDFGCFAAGTSNGFRIFNCDPFKETFRRDLKSGGFGIVEMLFRCNILALVGGGSNAH 110

Query: 75  LSPRCLRLIDTVAAVTKKDLNFKTSXXXXXXXXXXXXXXXQDRTFIYDVNSTTILEEIET 134
             P  + + D   +    +  F++                + + ++Y+     +L +IET
Sbjct: 111 YPPNKVMIWDDHRSHCIGEFAFRSDVRAVKLGKDYIVIVLERKIYVYNFTDLKLLHQIET 170

Query: 135 VPNTKGLCAFAPNSEACYLAIPASTSKGSALVYKASEPELICQIDAHESPLAAMAFSSNG 194
             N KGLC  + +S    LA P    +G   V      ++   I AH+S ++ MA + +G
Sbjct: 171 QSNPKGLCCLSHHSNTSVLACPG-VHQGHVRVEHFGL-KVTRMISAHDSHISCMALTMDG 228

Query: 195 TYLATASGKGTIIRVFLVAQATKSHSFRRGTYPSTIYSLSFGPSDDLPDVLVATSSSGSL 254
             LATAS KGT+IR+F     T+    RRG   + IYS++  P+      L  +S  G++
Sbjct: 229 LLLATASMKGTLIRIFNTMDGTRLQEVRRGLDKADIYSIALSPNVQW---LAVSSDKGTV 285

Query: 255 HMFFLD---AARNRRNQTSKLLG 274
           H+F L    A  +  N+   L G
Sbjct: 286 HIFSLRVRVAGEDASNEQRSLEG 308



>Os01g0934000 WD40-like domain containing protein
          Length = 457

 Score =  123 bits (308), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 107/375 (28%), Positives = 165/375 (44%), Gaps = 44/375 (11%)

Query: 17  SFNQDNSLFYVGTKDGFRIFDAHTGKLHYQKNIGGIGNM------------EMYFRTNIL 64
           SFNQD   F  GTK GFRI++    +  +++++G  G+             EM FR NIL
Sbjct: 103 SFNQDYGCFAAGTKSGFRIYNCDPFREIFRRDLGAAGDNGVGGGGGGIGVVEMLFRCNIL 162

Query: 65  AIVGTGEQPVLSPRCLRLIDTVAAVTKKDLNFKTSXXXXXXXXXXXXXXXQDRTFIYDVN 124
           A+VG G+ P   P  + + D   +    +L+F++                +++ F+Y+  
Sbjct: 163 ALVGGGDAPHYPPNKVMIWDDHQSRCIGELSFRSPVRGVRLRRDRIIVVLENKIFVYNFA 222

Query: 125 STTILEEIETVPNTKGLCAFAPNSEACYLAIPASTSKGSALV--YKASEPELICQIDAHE 182
              ++ +IET PN KGLCA +    +  L  P +  KG   V  Y A + + I   +AH 
Sbjct: 223 DLKLVHQIETAPNPKGLCAVSQQPGSIVLVCPGA-QKGQVRVEHYGARKTKFI---NAHT 278

Query: 183 SPLAAMAFSSNGTYLATASGKGTIIRVFLVAQATKSHSFRRGTYPSTIYSLSFGPSDDLP 242
           S +A  A S +G  +ATAS KGT++R++  A+       RRG   + IYSL+F  S++L 
Sbjct: 279 SRVACFALSQDGRLIATASTKGTLVRIYNAAEGNLLQEVRRGADRAEIYSLAF--SNNL- 335

Query: 243 DVLVATSSSGSLHMFFLDAARNRRNQTSKLLGSMIPGAITRALDPANHHI------IHNV 296
             L  +S  G++H+F L            L           A DP   HI      I  V
Sbjct: 336 QYLAVSSDKGTIHVFNLKINVGLTTNDKPL----------PAPDPDVPHISPSLSFIKGV 385

Query: 297 IPAGIKSCVAVHKVENSQNSSKLPAL---RTVVYIITHDGYFREYSINTTKSNESSWVLQ 353
           +P    S  +V +    +    + A    +  V ++  DG F     +     E   +LQ
Sbjct: 386 LPKYFHSEWSVAQFRLHEGEQYIVAFGHEKNTVAVVGMDGSFYRCQFDPVNGGE---MLQ 442

Query: 354 RE-LNLLDTGCSTPQ 367
            E  N L      PQ
Sbjct: 443 LECYNFLKPSSDQPQ 457



>Os05g0169200 WD40-like domain containing protein
          Length = 382

 Score =  116 bits (291), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/275 (30%), Positives = 123/275 (44%), Gaps = 17/275 (6%)

Query: 12  QIRCASFNQDNSLFYVGTKDGFRIFDA----HTGKLHYQKNIGGIGNMEMYFRTNILAIV 67
           ++   S+NQDNS F   T +GFR+F       T +  +  N GGIG  EM FRT+I  + 
Sbjct: 16  ELLSVSWNQDNSCFIAATTNGFRVFSCKPFHETMRRMFGPN-GGIGIAEMLFRTSIFGLA 74

Query: 68  GTGEQPVLSPRCLRLIDTVAAVTKKDLNFKTSXXXXXXXXXXXXXXXQDRTFIYDVNSTT 127
           G        P  L+L D          NF +                +    +Y      
Sbjct: 75  GAESNTEFPPTMLQLWDDYNERRIHKYNFTSEIRAVRLSKDYFVVVLEKTINVYRFKDLR 134

Query: 128 ILEEIETVPNTKGLCAFAPNSEACYLAIPASTSKGSALV--YKASEPELICQIDAHESPL 185
           +  +  TV N  GLC  + ++ A   A P  TSKG  L+  +   E   I    AH+SPL
Sbjct: 135 LFYQARTVSNPNGLCCLSHHANASVFACPG-TSKGQVLIEHFGLKETRFIA---AHDSPL 190

Query: 186 AAMAFSSNGTYLATASGKGTIIRVFLVAQATKSHSFRRGTYPSTIYSLSFGPSDDLPDVL 245
           + M  + +GT LATAS +GT+IR+F     T     RRG   + IYS++  P+      L
Sbjct: 191 SCMTMALDGTLLATASVRGTLIRIFNTRDGTCVQEVRRGLDRAEIYSIALSPN---VQWL 247

Query: 246 VATSSSGSLHMFFL---DAARNRRNQTSKLLGSMI 277
             +S  G++H+F L   DA  + +   S   G+ +
Sbjct: 248 AVSSDKGTVHVFSLRVKDAEEDAKKGESATAGAQV 282



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.132    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,308,553
Number of extensions: 435589
Number of successful extensions: 972
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 964
Number of HSP's successfully gapped: 4
Length of query: 374
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 272
Effective length of database: 11,709,973
Effective search space: 3185112656
Effective search space used: 3185112656
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)