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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0168500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : WD40-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.39 (0.0306) R2 : 0.332
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.04 (0.0794) R2dC : 0.253 R2C : 0.221
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.492 (0.0642) R2dN8 : 0.111 R2N8 : 0.0789
σ : 0.576
deviance : 151.42
__
_____
C
peak time of C : 7.08
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
140.03 0.556 7.36 0.107 1.03 0.726 0.0958 -0.00433 -0.341 7.27 69.94 4154 -- --
140.03 0.551 7.36 0.103 1.03 0.721 0.0932 -- -0.341 7.26 69.73 4153 -- --
140.05 0.551 7.35 0.109 1.03 0.726 -- -0.0249 -0.332 7.26 69.38 4153 -- --
140.05 0.551 7.35 0.108 1.03 0.722 -- -- -0.332 7.26 69.43 4153 -- --
195.23 0.651 7.38 0.123 -- 0.782 -- -0.144 -0.316 -- 69.14 4280 -- --
150.71 0.576 7.39 0.163 1.04 -- 0.0286 -- -0.474 7.09 -- -- -- --
150.71 0.575 7.39 0.164 1.04 -- -- -- -0.474 7.09 -- -- -- --
194.03 0.649 7.4 0.265 -- 0.997 -- -- -0.441 -- 71 7104 -- --
140.34 0.552 7.36 -- 1.03 0.718 -- -- -0.338 7.25 69 4144 -- --
207.57 0.673 7.41 0.184 -- -- -- -- -0.456 -- -- -- -- --
151.42 0.576 7.39 -- 1.04 -- -- -- -0.492 7.08 -- -- -- --
195.68 0.652 7.38 -- -- 0.769 -- -- -0.316 -- 69 4280 -- --
208.46 0.674 7.41 -- -- -- -- -- -0.476 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 133.73 wind 9.0 720 < th dose independent rect. 19 16
2 134.90 precipitation 0.1 720 < th dose independent rect. 23 8
3 134.90 precipitation 0.1 720 < th dose dependent rect. 23 8
4 135.44 temperature 10.0 720 > th dose independent rect. 11 8
5 135.44 atmosphere 1015.0 720 < th dose independent rect. 11 8
6 135.44 temperature 10.0 720 > th dose independent rect. 19 16
7 135.44 atmosphere 995.0 720 > th dose independent rect. 19 16
8 135.76 wind 9.0 720 < th dose independent rect. 23 8
9 135.88 temperature 10.0 720 > th dose independent rect. 23 8
10 135.88 temperature 30.0 720 < th dose independent rect. 23 8
11 135.88 humidity 50.0 720 > th dose independent rect. 23 8
13 135.88 atmosphere 995.0 720 > th dose independent rect. 23 8
14 135.88 radiation 40.0 720 < th dose independent rect. 23 8
15 135.88 temperature 10.0 720 > th dose independent rect. 7 16
16 135.92 humidity 60.0 14400 < th dose independent rect. 11 1
19 136.23 wind 7.0 43200 > th dose dependent rect. 11 2
20 136.52 humidity 60.0 14400 < th dose independent rect. 19 18
21 136.55 humidity 60.0 14400 < th dose independent rect. 8 5
22 136.57 humidity 70.0 4320 < th dose dependent rect. 11 1
38 136.68 humidity 60.0 14400 < th dose dependent rect. 12 6
54 136.74 humidity 60.0 14400 < th dose independent sin 6 NA
56 136.75 humidity 60.0 14400 < th dose dependent sin 17 NA
73 136.77 humidity 60.0 14400 < th dose independent rect. 16 21
92 136.79 humidity 60.0 14400 < th dose dependent rect. 13 2
172 137.05 humidity 60.0 14400 > th dose independent rect. 11 1
173 137.05 humidity 60.0 14400 < th dose independent rect. 18 23
208 137.09 wind 7.0 43200 > th dose independent rect. 12 1
209 137.09 radiation 40.0 4320 > th dose independent rect. 15 17
242 137.11 humidity 60.0 14400 < th dose dependent no NA NA
325 137.14 humidity 60.0 14400 > th dose independent rect. 15 22
344 137.20 humidity 60.0 14400 < th dose independent rect. 8 12
351 137.21 humidity 60.0 14400 > th dose independent rect. 19 18
358 137.22 humidity 60.0 14400 < th dose independent no NA NA
477 137.30 humidity 60.0 14400 > th dose independent rect. 8 5
480 137.30 humidity 60.0 14400 > th dose independent rect. 23 14
483 137.31 wind 9.0 43200 < th dose independent rect. 11 2
485 137.31 humidity 60.0 14400 > th dose independent rect. 5 8
529 137.38 humidity 50.0 720 > th dose independent rect. 19 16
535 137.40 humidity 70.0 14400 < th dose dependent rect. 19 18
536 137.42 humidity 60.0 14400 > th dose independent sin 7 NA
557 137.45 precipitation 0.1 14400 > th dose dependent rect. 4 1
583 137.49 humidity 70.0 14400 < th dose dependent rect. 7 6
602 137.53 humidity 60.0 14400 < th dose dependent sin 11 NA
615 137.55 precipitation 0.1 14400 > th dose dependent rect. 4 3
632 137.56 humidity 70.0 14400 < th dose dependent sin 8 NA
651 137.61 precipitation 0.1 14400 > th dose independent rect. 4 1
658 137.66 humidity 60.0 14400 > th dose independent rect. 18 23
680 137.72 humidity 60.0 14400 > th dose independent rect. 8 12
682 137.72 humidity 60.0 14400 > th dose independent rect. 8 16
684 137.72 humidity 60.0 14400 > th dose independent rect. 8 20
716 137.74 humidity 60.0 14400 > th dose independent no NA NA
777 137.77 humidity 60.0 14400 > th dose independent rect. 8 9
778 137.77 humidity 60.0 14400 > th dose independent rect. 4 13
808 137.81 precipitation 0.1 14400 < th dose independent rect. 4 2
816 137.81 precipitation 0.1 14400 < th dose dependent rect. 4 2
848 137.84 humidity 60.0 14400 > th dose independent rect. 10 23