BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0168500 Os01g0168500|AK072657
(417 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0168500 WD40-like domain containing protein 871 0.0
Os05g0169200 WD40-like domain containing protein 503 e-142
Os01g0934000 WD40-like domain containing protein 439 e-123
Os02g0791800 WD-40 repeat containing protein 142 3e-34
Os07g0670500 139 4e-33
AK111160 96 5e-20
AK108828 87 2e-17
Os07g0670400 83 3e-16
>Os01g0168500 WD40-like domain containing protein
Length = 417
Score = 871 bits (2250), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/417 (100%), Positives = 417/417 (100%)
Query: 1 MSSQVSTSRGLPSPSKLGTFESPHTWQMSGPTGQAEAGSSDDQDIRLLSVSWNQDFGCFA 60
MSSQVSTSRGLPSPSKLGTFESPHTWQMSGPTGQAEAGSSDDQDIRLLSVSWNQDFGCFA
Sbjct: 1 MSSQVSTSRGLPSPSKLGTFESPHTWQMSGPTGQAEAGSSDDQDIRLLSVSWNQDFGCFA 60
Query: 61 AGTSNGFRIFNCDPFKETFRRDLKSGGFGIVEMLFRCNILALVGGGSNAHYPPNKVMIWD 120
AGTSNGFRIFNCDPFKETFRRDLKSGGFGIVEMLFRCNILALVGGGSNAHYPPNKVMIWD
Sbjct: 61 AGTSNGFRIFNCDPFKETFRRDLKSGGFGIVEMLFRCNILALVGGGSNAHYPPNKVMIWD 120
Query: 121 DHRSHCIGEFAFRSDVRAVKLGKDYIVIVLERKIYVYNFTDLKLLHQIETQSNPKGLCCL 180
DHRSHCIGEFAFRSDVRAVKLGKDYIVIVLERKIYVYNFTDLKLLHQIETQSNPKGLCCL
Sbjct: 121 DHRSHCIGEFAFRSDVRAVKLGKDYIVIVLERKIYVYNFTDLKLLHQIETQSNPKGLCCL 180
Query: 181 SHHSNTSVLACPGVHQGHVRVEHFGLKVTRMISAHDSHISCMALTMDGLLLATASMKGTL 240
SHHSNTSVLACPGVHQGHVRVEHFGLKVTRMISAHDSHISCMALTMDGLLLATASMKGTL
Sbjct: 181 SHHSNTSVLACPGVHQGHVRVEHFGLKVTRMISAHDSHISCMALTMDGLLLATASMKGTL 240
Query: 241 IRIFNTMDGTRLQEVRRGLDKADIYSIALSPNVQWLAVSSDKGTVHIFSLRVRVAGEDAS 300
IRIFNTMDGTRLQEVRRGLDKADIYSIALSPNVQWLAVSSDKGTVHIFSLRVRVAGEDAS
Sbjct: 241 IRIFNTMDGTRLQEVRRGLDKADIYSIALSPNVQWLAVSSDKGTVHIFSLRVRVAGEDAS 300
Query: 301 NEQRSLEGPRMDHQNSSSSIDPLIQTNTGSNASSSLSFMKGILPKYFSSEWSFAQFHLPE 360
NEQRSLEGPRMDHQNSSSSIDPLIQTNTGSNASSSLSFMKGILPKYFSSEWSFAQFHLPE
Sbjct: 301 NEQRSLEGPRMDHQNSSSSIDPLIQTNTGSNASSSLSFMKGILPKYFSSEWSFAQFHLPE 360
Query: 361 VTRYIVAFGAQNTVMMVGLDGSFYRCSFDQVNGGQMLQKEYFRFIKADLTPLRTSAP 417
VTRYIVAFGAQNTVMMVGLDGSFYRCSFDQVNGGQMLQKEYFRFIKADLTPLRTSAP
Sbjct: 361 VTRYIVAFGAQNTVMMVGLDGSFYRCSFDQVNGGQMLQKEYFRFIKADLTPLRTSAP 417
>Os05g0169200 WD40-like domain containing protein
Length = 382
Score = 503 bits (1295), Expect = e-142, Method: Compositional matrix adjust.
Identities = 238/373 (63%), Positives = 285/373 (76%), Gaps = 1/373 (0%)
Query: 36 EAGSSDDQDIRLLSVSWNQDFGCFAAGTSNGFRIFNCDPFKETFRRDL-KSGGFGIVEML 94
EA SDD + LLSVSWNQD CF A T+NGFR+F+C PF ET RR +GG GI EML
Sbjct: 6 EASGSDDDGVELLSVSWNQDNSCFIAATTNGFRVFSCKPFHETMRRMFGPNGGIGIAEML 65
Query: 95 FRCNILALVGGGSNAHYPPNKVMIWDDHRSHCIGEFAFRSDVRAVKLGKDYIVIVLERKI 154
FR +I L G SN +PP + +WDD+ I ++ F S++RAV+L KDY V+VLE+ I
Sbjct: 66 FRTSIFGLAGAESNTEFPPTMLQLWDDYNERRIHKYNFTSEIRAVRLSKDYFVVVLEKTI 125
Query: 155 YVYNFTDLKLLHQIETQSNPKGLCCLSHHSNTSVLACPGVHQGHVRVEHFGLKVTRMISA 214
VY F DL+L +Q T SNP GLCCLSHH+N SV ACPG +G V +EHFGLK TR I+A
Sbjct: 126 NVYRFKDLRLFYQARTVSNPNGLCCLSHHANASVFACPGTSKGQVLIEHFGLKETRFIAA 185
Query: 215 HDSHISCMALTMDGLLLATASMKGTLIRIFNTMDGTRLQEVRRGLDKADIYSIALSPNVQ 274
HDS +SCM + +DG LLATAS++GTLIRIFNT DGT +QEVRRGLD+A+IYSIALSPNVQ
Sbjct: 186 HDSPLSCMTMALDGTLLATASVRGTLIRIFNTRDGTCVQEVRRGLDRAEIYSIALSPNVQ 245
Query: 275 WLAVSSDKGTVHIFSLRVRVAGEDASNEQRSLEGPRMDHQNSSSSIDPLIQTNTGSNASS 334
WLAVSSDKGTVH+FSLRV+ A EDA + + G +++ + S P+ QT GSN SS
Sbjct: 246 WLAVSSDKGTVHVFSLRVKDAEEDAKKGESATAGAQVNDNCNYGSTVPVTQTKIGSNTSS 305
Query: 335 SLSFMKGILPKYFSSEWSFAQFHLPEVTRYIVAFGAQNTVMMVGLDGSFYRCSFDQVNGG 394
SLSFMKGILPKYFSSEWSFAQF LPE+TRYI+AFG Q+TVMM+GLDGSFYR SFD VNGG
Sbjct: 306 SLSFMKGILPKYFSSEWSFAQFRLPEITRYIMAFGDQDTVMMIGLDGSFYRYSFDPVNGG 365
Query: 395 QMLQKEYFRFIKA 407
+M+ KEY F+KA
Sbjct: 366 EMMLKEYHLFLKA 378
>Os01g0934000 WD40-like domain containing protein
Length = 457
Score = 439 bits (1129), Expect = e-123, Method: Compositional matrix adjust.
Identities = 216/371 (58%), Positives = 268/371 (72%), Gaps = 30/371 (8%)
Query: 47 LLSVSWNQDFGCFAAGTSNGFRIFNCDPFKETFRRDLKSGGFGIV----------EMLFR 96
LL +S+NQD+GCFAAGT +GFRI+NCDPF+E FRRDL + G V EMLFR
Sbjct: 99 LLHISFNQDYGCFAAGTKSGFRIYNCDPFREIFRRDLGAAGDNGVGGGGGGIGVVEMLFR 158
Query: 97 CNILALVGGGSNAHYPPNKVMIWDDHRSHCIGEFAFRSDVRAVKLGKDYIVIVLERKIYV 156
CNILALVGGG HYPPNKVMIWDDH+S CIGE +FRS VR V+L +D I++VLE KI+V
Sbjct: 159 CNILALVGGGDAPHYPPNKVMIWDDHQSRCIGELSFRSPVRGVRLRRDRIIVVLENKIFV 218
Query: 157 YNFTDLKLLHQIETQSNPKGLCCLSHHSNTSVLACPGVHQGHVRVEHFGLKVTRMISAHD 216
YNF DLKL+HQIET NPKGLC +S + VL CPG +G VRVEH+G + T+ I+AH
Sbjct: 219 YNFADLKLVHQIETAPNPKGLCAVSQQPGSIVLVCPGAQKGQVRVEHYGARKTKFINAHT 278
Query: 217 SHISCMALTMDGLLLATASMKGTLIRIFNTMDGTRLQEVRRGLDKADIYSIALSPNVQWL 276
S ++C AL+ DG L+ATAS KGTL+RI+N +G LQEVRRG D+A+IYS+A S N+Q+L
Sbjct: 279 SRVACFALSQDGRLIATASTKGTLVRIYNAAEGNLLQEVRRGADRAEIYSLAFSNNLQYL 338
Query: 277 AVSSDKGTVHIFSLRVRVAGEDASNEQRSLEGPRMDHQNSSSSIDPLIQTNTGSNASSSL 336
AVSSDKGT+H+F+L++ V + + L P DP + + S SL
Sbjct: 339 AVSSDKGTIHVFNLKINVG---LTTNDKPLPAP-----------DPDV-----PHISPSL 379
Query: 337 SFMKGILPKYFSSEWSFAQFHLPEVTRYIVAFG-AQNTVMMVGLDGSFYRCSFDQVNGGQ 395
SF+KG+LPKYF SEWS AQF L E +YIVAFG +NTV +VG+DGSFYRC FD VNGG+
Sbjct: 380 SFIKGVLPKYFHSEWSVAQFRLHEGEQYIVAFGHEKNTVAVVGMDGSFYRCQFDPVNGGE 439
Query: 396 MLQKEYFRFIK 406
MLQ E + F+K
Sbjct: 440 MLQLECYNFLK 450
>Os02g0791800 WD-40 repeat containing protein
Length = 374
Score = 142 bits (359), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 89/263 (33%), Positives = 139/263 (52%), Gaps = 10/263 (3%)
Query: 51 SWNQDFGCFAAGTSNGFRIFNCDPFKETFRRDLKSGGFGIVEMLFRCNILALVGGGSNAH 110
S+NQD F GT +GFRIF+ K +++++ GG G +EM FR NILA+VG G
Sbjct: 17 SFNQDNSLFYVGTKDGFRIFDAHTGKLHYQKNI--GGIGNMEMYFRTNILAIVGTGEQPV 74
Query: 111 YPPNKVMIWDDHRSHCIGEFAFRSDVRAVKLGKDYIVIVLERKIYVYNFTDLKLLHQIET 170
P + + D + + F++ V AV+L + +V+VL+ + ++Y+ +L +IET
Sbjct: 75 LSPRCLRLIDTVAAVTKKDLNFKTSVLAVRLSRTRLVVVLQDRTFIYDVNSTTILEEIET 134
Query: 171 QSNPKGLCCLSHHSNTSVLACPG-VHQGHVRVEHFGL-KVTRMISAHDSHISCMALTMDG 228
N KGLC + +S LA P +G V ++ I AH+S ++ MA + +G
Sbjct: 135 VPNTKGLCAFAPNSEACYLAIPASTSKGSALVYKASEPELICQIDAHESPLAAMAFSSNG 194
Query: 229 LLLATASMKGTLIRIFNTMDGTRLQEVRRGLDKADIYSIALSPNVQW---LAVSSDKGTV 285
LATAS KGT+IR+F T+ RRG + IYS++ P+ L +S G++
Sbjct: 195 TYLATASGKGTIIRVFLVAQATKSHSFRRGTYPSTIYSLSFGPSDDLPDVLVATSSSGSL 254
Query: 286 HIFSLRVRVAGEDASNEQRSLEG 308
H+F L A + N+ L G
Sbjct: 255 HMFFLD---AARNRRNQTSKLLG 274
>Os07g0670500
Length = 396
Score = 139 bits (350), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 115/386 (29%), Positives = 170/386 (44%), Gaps = 74/386 (19%)
Query: 50 VSWNQDFGCFAAGTSNGFRIFNCDPFKETFRRDLKSGGFGIVEMLFR----CNILALVGG 105
+S++ D C A + C+ FK + +M R C ++ G
Sbjct: 28 LSFSHDASCLIAADEASVQWRCCETFKLRGLYEESGATAAAGDMRDRNQSTCAVVRRAGA 87
Query: 106 GSNAH-YPPNKVMIWDDHRSHCIGEFAFRSDVRAVKLGKDYIVIVLERKIYVYNFTDLK- 163
G + P + + S IG DVR+V + D V+V ++ V+ D +
Sbjct: 88 GFEVRRFRPGSLNYSSRYDSVRIGGGDDDDDVRSVHVHGDRTVVVHAGRVDVFGLDDGRR 147
Query: 164 ----LLHQIETQSNPKGLCCLSHHSNTS--VLACPGVHQGHVRVEHF-GLKVTRMISAHD 216
L ++ET N G C +S S ACPGV+ G++RVE + G +I AH
Sbjct: 148 KAAVLQRRVETGDNRAGACAVSRGPPGSPFAFACPGVNDGNLRVERWVGGFTPLVIGAHR 207
Query: 217 SHISCMALTMDGLLLATASMKGTLIRIFNTMDGTRLQEVR-------------------- 256
++ +A++ L+ATAS+KGT++R+F DG LQEVR
Sbjct: 208 WRVASVAMSWGAKLVATASVKGTIVRVFRVADGELLQEVRLAAAPAAEATAKKSKPHNTE 267
Query: 257 ------------RGLDKADIYSIALSPNVQWLAVSSDKGTVHIFSLRV------RVAGED 298
RG D+ADIYSI SP+ +WLAVSSDKGTVH+F + V + +D
Sbjct: 268 TKSLTKFRACMKRGFDRADIYSIVFSPDSEWLAVSSDKGTVHVFHINVCSPSSSKTGCQD 327
Query: 299 ASNEQRSLEGPRMDHQNSSSSIDPLIQTNTGSNASSSLSFMKGILPKYFSSEWSFAQFHL 358
+ S M + SSI L+ YF E S AQFHL
Sbjct: 328 TTQSYESYGAKAM--KKYVSSIKDLLTLG------------------YFDPERSVAQFHL 367
Query: 359 PEVTRYIVAFGA---QNTVMMVGLDG 381
+ +Y+VAFG +N V+++G+DG
Sbjct: 368 CDNVKYLVAFGTRPNKNIVLIIGMDG 393
>AK111160
Length = 909
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 80/257 (31%), Positives = 119/257 (46%), Gaps = 75/257 (29%)
Query: 169 ETQSNPKGLCCLSH----------HSNTSVLACPGVHQGHVRVE--HFGLK--------- 207
+T NPKGL ++ ++V+A PG +GHV++ H G+
Sbjct: 474 QTHKNPKGLGSVAPLYLHTPPGTVSQPSAVVALPGRQKGHVQLLLIHLGMTHVDQSRPAS 533
Query: 208 -------VTRMISAHDSHISCMALTMDGLLLATASMKGTLIRIFN----TMDG------- 249
+ +I AH++ ++ +AL+ DG LLATAS KGTLIRI++ DG
Sbjct: 534 VLAPPVGASTIIVAHEASLAALALSPDGRLLATASSKGTLIRIWSHNIGQSDGTGSRNSR 593
Query: 250 ------------------TRLQEVRRGLDKADIYSIALSPNVQWLAVSSDKGTVHIFSLR 291
T +E+RRG D A I SIA +P+ +A +SDKGT+HIF L
Sbjct: 594 ASPHEPKSNAPGRTGVGATLARELRRGTDPATILSIAFAPDASIVAAASDKGTIHIFLLS 653
Query: 292 VRVAGEDASNEQRSLEGPRMDHQNSSSSIDPLIQTNTGSNASSSLSFMKG---------I 342
+ A + + E PR +++ + +N G A+S L G +
Sbjct: 654 QPGSMAPADD---ATELPRSQAYSTTRA------SNLGRVAASYLPAGLGNLAGQIPPSV 704
Query: 343 LPKYFSSEWSFAQFHLP 359
LP+Y SEWS AQF +P
Sbjct: 705 LPQYLKSEWSSAQFRIP 721
>AK108828
Length = 344
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 56/77 (72%)
Query: 214 AHDSHISCMALTMDGLLLATASMKGTLIRIFNTMDGTRLQEVRRGLDKADIYSIALSPNV 273
AHD+ ++ L DG +A+AS KGTLIR++N G L+E+RRG+D+ADIY IA +
Sbjct: 1 AHDADLAQFTLNFDGSRIASASEKGTLIRLWNCYTGEPLRELRRGMDRADIYCIAFNTAS 60
Query: 274 QWLAVSSDKGTVHIFSL 290
++A SSDKGT+HIFSL
Sbjct: 61 TYIACSSDKGTIHIFSL 77
>Os07g0670400
Length = 250
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 115/252 (45%), Gaps = 38/252 (15%)
Query: 31 PTGQAEAGSSDDQDIRLLSVSWNQDFGCFAAGTSNGFRIFNC--DPFKETFRRDLK---- 84
P A AG S L+ +++N F A T+ G R+F+C P + F RD++
Sbjct: 6 PPAVAVAGESPPP---LVHLAFNLYSTGFIAATATGLRVFSCFSSPLNKVFARDVEVCPE 62
Query: 85 --------SGGFGIVEMLFRCNILALV------GGGSNAHYPPNKVMIWD--DHRSHCIG 128
I EM F A+V GGG +K+ W + R +C+
Sbjct: 63 DDGGCGGGGWKVAIAEM-FNEAFAAVVFRREKGGGGGTV----DKICFWSIPNGRMYCMH 117
Query: 129 E-FAFRSDVRAVKLGKDYIVIVLERKIYVYNF----TDLKLLHQIETQSNPKGLCCLSHH 183
+ F VR V+L +++++ + + +Y K + +ET +NP GL +
Sbjct: 118 KTLPFDGAVRGVRLVGEFLLVAGDERAALYELPHASAPPKKVKVVETAANPLGLGAVVQP 177
Query: 184 SNTS--VLACPGVHQGHVRVEHFGLKVTRMISAHDSHISCMALTMDGLLLATASMKGTLI 241
+ V A P +G V+V + + AH S ++ +AL+ DG LLATA KGTL+
Sbjct: 178 DGNARFVAAAPQRMKGMVQVHRLA-EDHVYVRAHYSSLAAIALSADGRLLATAGSKGTLV 236
Query: 242 RIFNTMDGTRLQ 253
RIF+T DG LQ
Sbjct: 237 RIFSTSDGKLLQ 248
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.135 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,421,777
Number of extensions: 598776
Number of successful extensions: 1283
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 1273
Number of HSP's successfully gapped: 9
Length of query: 417
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 314
Effective length of database: 11,657,759
Effective search space: 3660536326
Effective search space used: 3660536326
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 157 (65.1 bits)