Os05g0169200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : WD40-like domain containing protein.
FiT-DB / Search/ Help/ Sample detail
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Os05g0169200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : WD40-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 247.84 | 0.74 | 6.42 | -0.987 | 1.01 | -2.21 | -0.73 | 8.98 | -0.735 | 8.98 | 26 | 4609 | -- | -- |
| 235.24 | 0.714 | 6.55 | -1.08 | 1.08 | -2.98 | -1.03 | -- | -0.549 | 8.57 | 19.41 | 28775 | -- | -- |
| 249.66 | 0.736 | 6.42 | -1.01 | 1.01 | -2.21 | -- | 8.98 | -0.736 | 8.92 | 26 | 4607 | -- | -- |
| 234.58 | 0.713 | 6.55 | -0.75 | 0.987 | -3.16 | -- | -- | -0.486 | 8.78 | 19.5 | 28659 | -- | -- |
| 299.29 | 0.806 | 6.4 | -0.713 | -- | -2.21 | -- | 9.42 | -0.625 | -- | 25.9 | 5107 | -- | -- |
| 369.25 | 0.901 | 6.81 | -4.05 | 1.08 | -- | -0.703 | -- | -1.69 | 9.01 | -- | -- | -- | -- |
| 370.94 | 0.902 | 6.81 | -4.07 | 1.08 | -- | -- | -- | -1.69 | 8.96 | -- | -- | -- | -- |
| 296.57 | 0.802 | 6.55 | -0.559 | -- | -3.31 | -- | -- | -0.403 | -- | 19.3 | 29604 | -- | -- |
| 243.89 | 0.727 | 6.49 | -- | 1.04 | -3.4 | -- | -- | -0.252 | 8.33 | 19.29 | 45980 | -- | -- |
| 437.75 | 0.978 | 6.84 | -4.07 | -- | -- | -- | -- | -1.68 | -- | -- | -- | -- | -- |
| 807.77 | 1.33 | 6.71 | -- | 1.08 | -- | -- | -- | -1.24 | 9.25 | -- | -- | -- | -- |
| 300.48 | 0.807 | 6.53 | -- | -- | -3.75 | -- | -- | -0.29 | -- | 18.76 | 47520 | -- | -- |
| 875.13 | 1.38 | 6.74 | -- | -- | -- | -- | -- | -1.23 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 210.49 | radiation | 30 | 43200 | < th | dose independent | rect. | 15 | 16 |
| 2 | 211.12 | radiation | 20 | 43200 | < th | dose independent | rect. | 15 | 11 |
| 3 | 211.13 | radiation | 20 | 43200 | < th | dose independent | rect. | 15 | 3 |
| 5 | 211.13 | radiation | 20 | 43200 | < th | dose independent | rect. | 15 | 8 |
| 31 | 211.44 | radiation | 30 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 46 | 212.17 | radiation | 40 | 43200 | < th | dose independent | rect. | 14 | 18 |
| 58 | 212.39 | radiation | 20 | 43200 | > th | dose dependent | rect. | 15 | 17 |
| 86 | 213.06 | humidity | 70 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 127 | 213.80 | radiation | 1 | 43200 | > th | dose dependent | rect. | 16 | 16 |
| 146 | 214.40 | radiation | 30 | 43200 | < th | dose independent | sin | 14 | NA |
| 153 | 214.74 | radiation | 40 | 43200 | < th | dose dependent | rect. | 16 | 16 |
| 154 | 214.81 | radiation | 30 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 188 | 215.27 | humidity | 70 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 213 | 215.83 | radiation | 10 | 43200 | < th | dose dependent | rect. | 4 | 3 |
| 214 | 215.83 | radiation | 10 | 43200 | < th | dose dependent | rect. | 22 | 9 |
| 217 | 215.84 | radiation | 10 | 43200 | < th | dose dependent | rect. | 1 | 6 |
| 282 | 216.95 | radiation | 40 | 43200 | > th | dose dependent | rect. | 13 | 19 |
| 290 | 217.20 | radiation | 40 | 43200 | > th | dose dependent | rect. | 13 | 3 |
| 307 | 217.26 | wind | 1 | 14400 | < th | dose dependent | rect. | 22 | 8 |
| 328 | 217.54 | humidity | 60 | 43200 | < th | dose independent | rect. | 19 | 14 |
| 329 | 217.56 | wind | 1 | 43200 | < th | dose dependent | rect. | 19 | 9 |
| 347 | 217.88 | radiation | 10 | 43200 | < th | dose independent | rect. | 6 | 2 |
| 351 | 217.94 | radiation | 40 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 365 | 218.05 | humidity | 70 | 43200 | < th | dose dependent | rect. | 19 | 14 |
| 369 | 218.18 | radiation | 1 | 43200 | > th | dose dependent | sin | 13 | NA |
| 383 | 218.28 | humidity | 60 | 43200 | > th | dose independent | rect. | 19 | 14 |
| 390 | 218.48 | radiation | 40 | 43200 | < th | dose dependent | rect. | 22 | 8 |
| 394 | 218.52 | radiation | 10 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 425 | 218.61 | radiation | 10 | 43200 | < th | dose independent | rect. | 22 | 10 |
| 429 | 218.62 | radiation | 10 | 43200 | < th | dose independent | rect. | 4 | 4 |
| 431 | 218.62 | radiation | 10 | 43200 | < th | dose independent | rect. | 1 | 7 |
| 441 | 218.63 | radiation | 1 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 442 | 218.63 | radiation | 1 | 43200 | < th | dose dependent | rect. | 7 | 5 |
| 445 | 218.65 | radiation | 40 | 43200 | < th | dose dependent | rect. | 1 | 5 |
| 449 | 218.67 | radiation | 20 | 43200 | > th | dose dependent | sin | 13 | NA |
| 460 | 218.70 | temperature | 15 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 482 | 218.87 | radiation | 1 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 484 | 218.89 | radiation | 1 | 43200 | > th | dose independent | rect. | 7 | 5 |
| 502 | 218.97 | radiation | 1 | 43200 | < th | dose independent | rect. | 7 | 5 |
| 505 | 219.00 | radiation | 1 | 43200 | > th | dose independent | rect. | 7 | 2 |
| 506 | 219.01 | wind | 1 | 43200 | < th | dose dependent | rect. | 22 | 4 |
| 516 | 219.17 | radiation | 1 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 535 | 219.32 | radiation | 1 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 536 | 219.32 | radiation | 1 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 555 | 219.48 | radiation | 40 | 43200 | < th | dose independent | rect. | 22 | 10 |
| 566 | 219.66 | radiation | 40 | 43200 | < th | dose independent | rect. | 5 | 3 |
| 570 | 219.68 | radiation | 40 | 43200 | < th | dose independent | rect. | 24 | 8 |
| 591 | 219.75 | humidity | 60 | 43200 | < th | dose independent | rect. | 18 | 16 |
| 602 | 219.86 | radiation | 30 | 43200 | < th | dose dependent | sin | 12 | NA |
| 745 | 220.63 | temperature | 15 | 43200 | < th | dose dependent | rect. | 23 | 4 |
| 875 | 221.27 | radiation | 1 | 43200 | < th | dose dependent | rect. | 19 | 16 |
| 876 | 221.29 | radiation | 1 | 43200 | < th | dose dependent | rect. | 21 | 14 |
| 879 | 221.30 | radiation | 1 | 43200 | < th | dose dependent | rect. | 23 | 12 |
| 894 | 221.45 | radiation | 1 | 43200 | < th | dose dependent | rect. | 3 | 8 |
| 913 | 221.58 | temperature | 15 | 43200 | > th | dose independent | rect. | 24 | 1 |