BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0781400 Os02g0781400|AK073762
(255 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0781400 Similar to 20 kDa chaperonin, chloroplast prec... 451 e-127
Os09g0438700 Similar to 20 kDa chaperonin, chloroplast prec... 315 3e-86
Os06g0196900 Similar to 20 kDa chaperonin, chloroplast prec... 313 7e-86
Os06g0197500 Chaperonin Cpn10 family protein 285 2e-77
Os03g0366000 Similar to 10 kDa chaperonin 71 7e-13
Os07g0641700 Similar to 10 kDa chaperonin (Protein CPN10) (... 67 1e-11
>Os02g0781400 Similar to 20 kDa chaperonin, chloroplast precursor (Protein Cpn21)
(Chloroplast protein Cpn10) (Chloroplast chaperonin 10)
(Ch-CPN10)
Length = 255
Score = 451 bits (1160), Expect = e-127, Method: Compositional matrix adjust.
Identities = 243/255 (95%), Positives = 243/255 (95%)
Query: 1 MAPVQXXXXXXXXXXXXTKGMASRDALRLPPPAAVRVLRQAPRPSRGLVVRAAAASVAPK 60
MAPVQ TKGMASRDALRLPPPAAVRVLRQAPRPSRGLVVRAAAASVAPK
Sbjct: 1 MAPVQFSAAGVGAVAFATKGMASRDALRLPPPAAVRVLRQAPRPSRGLVVRAAAASVAPK 60
Query: 61 YTTLKPLADRVLVKIKSAEQKTTGGILLPSAAQSKPQGGEVVAIGEGRTVGDNKVEVSIQ 120
YTTLKPLADRVLVKIKSAEQKTTGGILLPSAAQSKPQGGEVVAIGEGRTVGDNKVEVSIQ
Sbjct: 61 YTTLKPLADRVLVKIKSAEQKTTGGILLPSAAQSKPQGGEVVAIGEGRTVGDNKVEVSIQ 120
Query: 121 VGSQVVYSKYAGTEVELNDSNHLILKEDDIIGILETDDAKDMKPLSDRVLIKVAEAEDKT 180
VGSQVVYSKYAGTEVELNDSNHLILKEDDIIGILETDDAKDMKPLSDRVLIKVAEAEDKT
Sbjct: 121 VGSQVVYSKYAGTEVELNDSNHLILKEDDIIGILETDDAKDMKPLSDRVLIKVAEAEDKT 180
Query: 181 PGGLLLTETTKEKPSIGTVVAVGPGPLDEEGKRIPLSVSAGSTVLYSKYAGSEFKGSDGT 240
PGGLLLTETTKEKPSIGTVVAVGPGPLDEEGKRIPLSVSAGSTVLYSKYAGSEFKGSDGT
Sbjct: 181 PGGLLLTETTKEKPSIGTVVAVGPGPLDEEGKRIPLSVSAGSTVLYSKYAGSEFKGSDGT 240
Query: 241 SYIVLRVSDLMAVLS 255
SYIVLRVSDLMAVLS
Sbjct: 241 SYIVLRVSDLMAVLS 255
>Os09g0438700 Similar to 20 kDa chaperonin, chloroplast precursor (Protein Cpn21)
(Chloroplast protein Cpn10) (Chloroplast chaperonin 10)
(Ch-CPN10) (Chaperonin 20)
Length = 245
Score = 315 bits (806), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 158/224 (70%), Positives = 191/224 (85%), Gaps = 2/224 (0%)
Query: 32 PAAVRVLRQAPRPSRGLVVRAAAASVAPKYTTLKPLADRVLVKIKSAEQKTTGGILLPSA 91
P+ + R RGLVVRAA V+PKYT++KPL DRVLVKIK+++ KT GGILLP++
Sbjct: 24 PSVAAAASRGRRGYRGLVVRAATV-VSPKYTSIKPLGDRVLVKIKTSDDKTVGGILLPTS 82
Query: 92 AQSKPQGGEVVAIGEGRTVGDNKVEVSIQVGSQVVYSKYAGTEVELNDSNHLILKEDDII 151
QSKPQGG+VVA+GEGR++G + +E+S+ VG+QVVYSKYAGTE+E + S+HLILKEDDII
Sbjct: 83 VQSKPQGGQVVAVGEGRSMGSDSIEISVPVGAQVVYSKYAGTELEFDGSDHLILKEDDII 142
Query: 152 GILETDDAKDMKPLSDRVLIKVAEAEDKTPGGLLLTETTKEKPSIGTVVAVGPGPLDEEG 211
GIL+TDD KD+KPL+DRVLIKVAEAE+KT GGLLLT+ TKEKPSIGTV AVGPGPL E+G
Sbjct: 143 GILDTDDVKDLKPLNDRVLIKVAEAEEKTAGGLLLTQATKEKPSIGTVTAVGPGPLVEDG 202
Query: 212 KRIPLSVSAGSTVLYSKYAGSEFKGSDGTSYIVLRVSDLMAVLS 255
R PLS++ G+TV+YSKYAGSEFKG DG YIVLRVSD+MAVLS
Sbjct: 203 SRKPLSITPGNTVMYSKYAGSEFKGEDG-EYIVLRVSDVMAVLS 245
>Os06g0196900 Similar to 20 kDa chaperonin, chloroplast precursor (Protein Cpn21)
(Chloroplast protein Cpn10) (Chloroplast chaperonin 10)
(Ch-CPN10) (Chaperonin 20)
Length = 221
Score = 313 bits (802), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 163/224 (72%), Positives = 185/224 (82%), Gaps = 3/224 (1%)
Query: 1 MAPVQXXXXXXXXXXXXTKGMASRDALRLPPPAAVRVLRQAPRPSRGLVVRAAAASVAPK 60
M+ VQ G +S D LRL PP+ VRV + RPSR LVV+AA V PK
Sbjct: 1 MSSVQLSGAGVAAVAFTKNGASSFDGLRLAPPS-VRVC-SSRRPSRSLVVKAATV-VTPK 57
Query: 61 YTTLKPLADRVLVKIKSAEQKTTGGILLPSAAQSKPQGGEVVAIGEGRTVGDNKVEVSIQ 120
YT+LKPL DRVLVK+ +AE+KT GGILLPS AQSKPQGGEVVA+GEGRT+GD KVEVS+Q
Sbjct: 58 YTSLKPLGDRVLVKLGAAEEKTVGGILLPSTAQSKPQGGEVVAVGEGRTIGDKKVEVSLQ 117
Query: 121 VGSQVVYSKYAGTEVELNDSNHLILKEDDIIGILETDDAKDMKPLSDRVLIKVAEAEDKT 180
+G++VVYSKYAGTEV+ ND+ HLILKEDDIIG+LETDD KDMKPL+DRVLIKVAEAEDKT
Sbjct: 118 IGAEVVYSKYAGTEVQFNDTKHLILKEDDIIGVLETDDVKDMKPLNDRVLIKVAEAEDKT 177
Query: 181 PGGLLLTETTKEKPSIGTVVAVGPGPLDEEGKRIPLSVSAGSTV 224
GGL+LTETTKEKPSIGTVVAVGPGPLD+EGKR PLSVSAGST+
Sbjct: 178 AGGLILTETTKEKPSIGTVVAVGPGPLDDEGKRQPLSVSAGSTL 221
Score = 78.2 bits (191), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 43/93 (46%), Positives = 65/93 (69%), Gaps = 2/93 (2%)
Query: 162 MKPLSDRVLIKVAEAEDKTPGGLLLTETTKEKPSIGTVVAVGPGPLDEEGKRIPLSVSAG 221
+KPL DRVL+K+ AE+KT GG+LL T + KP G VVAVG G + K++ +S+ G
Sbjct: 61 LKPLGDRVLVKLGAAEEKTVGGILLPSTAQSKPQGGEVVAVGEGRTIGD-KKVEVSLQIG 119
Query: 222 STVLYSKYAGSEFKGSDGTSYIVLRVSDLMAVL 254
+ V+YSKYAG+E + +D T +++L+ D++ VL
Sbjct: 120 AEVVYSKYAGTEVQFND-TKHLILKEDDIIGVL 151
>Os06g0197500 Chaperonin Cpn10 family protein
Length = 204
Score = 285 bits (730), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 139/164 (84%), Positives = 155/164 (94%)
Query: 69 DRVLVKIKSAEQKTTGGILLPSAAQSKPQGGEVVAIGEGRTVGDNKVEVSIQVGSQVVYS 128
DRVLVK+ +AE+KT GGILLPS AQSKPQGGEVVA+GEGRT+GD KVEVS+Q+G++VVYS
Sbjct: 37 DRVLVKLGAAEEKTVGGILLPSTAQSKPQGGEVVAVGEGRTIGDKKVEVSLQIGAEVVYS 96
Query: 129 KYAGTEVELNDSNHLILKEDDIIGILETDDAKDMKPLSDRVLIKVAEAEDKTPGGLLLTE 188
KYAGTEV+ ND+ HLILKEDDIIG+LETDD KDMKPL+DRVLIKVAEAEDKT GGL+LTE
Sbjct: 97 KYAGTEVQFNDTKHLILKEDDIIGVLETDDVKDMKPLNDRVLIKVAEAEDKTAGGLILTE 156
Query: 189 TTKEKPSIGTVVAVGPGPLDEEGKRIPLSVSAGSTVLYSKYAGS 232
TTKEKPSIGTVVAVGPGPLD+EGKR PLSVSAGSTV+YSKYAGS
Sbjct: 157 TTKEKPSIGTVVAVGPGPLDDEGKRQPLSVSAGSTVMYSKYAGS 200
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 61/88 (69%), Gaps = 2/88 (2%)
Query: 167 DRVLIKVAEAEDKTPGGLLLTETTKEKPSIGTVVAVGPGPLDEEGKRIPLSVSAGSTVLY 226
DRVL+K+ AE+KT GG+LL T + KP G VVAVG G + K++ +S+ G+ V+Y
Sbjct: 37 DRVLVKLGAAEEKTVGGILLPSTAQSKPQGGEVVAVGEGRTIGD-KKVEVSLQIGAEVVY 95
Query: 227 SKYAGSEFKGSDGTSYIVLRVSDLMAVL 254
SKYAG+E + +D T +++L+ D++ VL
Sbjct: 96 SKYAGTEVQFND-TKHLILKEDDIIGVL 122
>Os03g0366000 Similar to 10 kDa chaperonin
Length = 99
Score = 71.2 bits (173), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 61/97 (62%), Gaps = 1/97 (1%)
Query: 159 AKDMKPLSDRVLIKVAEAEDKTPGGLLLTETTKEKPSIGTVVAVGPGPLDEEGKRIPLSV 218
A+ + P +RVL++ +K+ GG+LL ETTK++ + VVAVGPG D +GK IP+S+
Sbjct: 3 ARRLIPSMNRVLVEKLLQPNKSAGGILLPETTKQQLNSAKVVAVGPGERDRDGKLIPVSL 62
Query: 219 SAGSTVLYSKYAGSEFKGSDGTSYIVLRVSDLMAVLS 255
G TVL +Y G+E K ++ Y++ R D++ L
Sbjct: 63 KEGDTVLLPEYGGTEVKLAE-KEYLLFREHDILGRLE 98
>Os07g0641700 Similar to 10 kDa chaperonin (Protein CPN10) (Protein groES)
Length = 98
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 59/96 (61%), Gaps = 1/96 (1%)
Query: 159 AKDMKPLSDRVLIKVAEAEDKTPGGLLLTETTKEKPSIGTVVAVGPGPLDEEGKRIPLSV 218
A+ + P +RVL++ K+ GG+LL ET+K+ S G VVAVGPG D++GK IP+++
Sbjct: 2 ARRLIPSLNRVLVEKLVQPKKSAGGILLPETSKQLNS-GKVVAVGPGERDKDGKLIPVAL 60
Query: 219 SAGSTVLYSKYAGSEFKGSDGTSYIVLRVSDLMAVL 254
G TVL +Y G E K + Y++ R D++ L
Sbjct: 61 KEGDTVLLPEYGGLEVKLAAEKEYLLFREHDILGTL 96
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.311 0.131 0.351
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,640,227
Number of extensions: 390910
Number of successful extensions: 1115
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 1100
Number of HSP's successfully gapped: 10
Length of query: 255
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 156
Effective length of database: 11,866,615
Effective search space: 1851191940
Effective search space used: 1851191940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 155 (64.3 bits)