Os03g0366000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 10 kDa chaperonin.
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Os03g0366000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 10 kDa chaperonin.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 103.38 | 0.478 | 11.1 | 0.0268 | 1.59 | 1.92 | 1.3 | -0.124 | -0.317 | 16 | 23.24 | 15 | -- | -- |
| 103.07 | 0.476 | 11.1 | 0.0553 | 1.6 | 1.9 | 1.32 | -- | -0.308 | 16.1 | 23.16 | 12 | -- | -- |
| 106.86 | 0.481 | 11 | 0.219 | 1.59 | 1.91 | -- | 1.18 | -0.267 | 16.1 | 23.08 | 9 | -- | -- |
| 107.81 | 0.487 | 11.1 | 0.0563 | 1.58 | 1.99 | -- | -- | -0.311 | 16.2 | 23.23 | 13 | -- | -- |
| 193.76 | 0.648 | 11.1 | -0.106 | -- | 3.21 | -- | 0.495 | -0.359 | -- | 24.12 | 39 | -- | -- |
| 159.4 | 0.592 | 11 | 0.387 | 2.32 | -- | 1.93 | -- | -0.0375 | 15.7 | -- | -- | -- | -- |
| 170.7 | 0.612 | 11 | 0.418 | 2.33 | -- | -- | -- | -0.0262 | 15.7 | -- | -- | -- | -- |
| 192.4 | 0.646 | 11.1 | -0.196 | -- | 3.33 | -- | -- | -0.452 | -- | 24 | 41 | -- | -- |
| 107.8 | 0.484 | 11.1 | -- | 1.56 | 2.02 | -- | -- | -0.323 | 16.2 | 23.24 | 9 | -- | -- |
| 471.19 | 1.01 | 11 | 0.321 | -- | -- | -- | -- | -0.0883 | -- | -- | -- | -- | -- |
| 175.3 | 0.619 | 11 | -- | 2.32 | -- | -- | -- | -0.0728 | 15.7 | -- | -- | -- | -- |
| 193.36 | 0.648 | 11.1 | -- | -- | 3.3 | -- | -- | -0.426 | -- | 24.06 | 41 | -- | -- |
| 473.9 | 1.02 | 11 | -- | -- | -- | -- | -- | -0.124 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 99.52 | temperature | 20 | 30 | > th | dose dependent | sin | 1 | NA |
| 5 | 99.75 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 16 |
| 16 | 100.75 | temperature | 30 | 30 | < th | dose dependent | sin | 0 | NA |
| 31 | 102.21 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 20 |
| 96 | 106.00 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 16 |
| 107 | 106.39 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 113 | 106.52 | temperature | 25 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 116 | 106.60 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 14 |
| 127 | 106.75 | temperature | 25 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 139 | 107.16 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 14 |
| 168 | 107.55 | temperature | 25 | 10 | > th | dose dependent | rect. | 3 | 22 |
| 176 | 107.64 | temperature | 25 | 10 | > th | dose dependent | rect. | 24 | 23 |
| 183 | 107.69 | temperature | 25 | 10 | > th | dose dependent | no | NA | NA |
| 293 | 109.22 | temperature | 25 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 304 | 109.33 | temperature | 25 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 404 | 111.19 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 754 | 115.65 | temperature | 25 | 90 | < th | dose independent | rect. | 4 | 17 |
| 778 | 115.96 | temperature | 25 | 10 | > th | dose independent | rect. | 7 | 16 |
| 809 | 116.33 | temperature | 25 | 90 | > th | dose independent | rect. | 7 | 15 |
| 835 | 116.63 | temperature | 25 | 90 | < th | dose independent | rect. | 3 | 20 |
| 867 | 117.03 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 982 | 118.31 | temperature | 25 | 10 | < th | dose independent | rect. | 5 | 16 |
| 986 | 118.32 | temperature | 25 | 30 | > th | dose dependent | rect. | 19 | 19 |
| 993 | 118.43 | temperature | 25 | 10 | > th | dose dependent | rect. | 11 | 23 |