Os02g0781400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 20 kDa chaperonin, chloroplast precursor (Protein Cpn21) (Chloroplast protein Cpn10) (Chloroplast chaperonin 10) (Ch-CPN10).
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Os02g0781400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 20 kDa chaperonin, chloroplast precursor (Protein Cpn21) (Chloroplast protein Cpn10) (Chloroplast chaperonin 10) (Ch-CPN10).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 696.11 | 1.24 | 5.76 | -0.464 | 2.1 | 1.66 | 2.07 | 16.9 | -1.13 | 21.1 | 2.36 | 7002 | 15.9 | -- |
| 843.64 | 1.35 | 6.17 | -3.84 | 2.05 | 1.72 | 3.7 | -- | -1.31 | 22 | 31.4 | 4699 | 17.2 | -- |
| 696.1 | 1.23 | 5.77 | -0.607 | 1.89 | 1.85 | -- | 18.1 | -1.2 | 21.2 | -0.7797 | 6812 | 16.3 | -- |
| 836.91 | 1.35 | 6.28 | -4.18 | 2.04 | 2.06 | -- | -- | -1.75 | 21.5 | 28.8 | 1852 | 14 | -- |
| 809.68 | 1.33 | 5.81 | -1.21 | -- | 3.98 | -- | 20.5 | -1.5 | -- | -18 | 6670 | 16.1 | -- |
| 912.88 | 1.42 | 6.33 | -3.52 | 2.22 | -- | 3.53 | -- | -1.94 | 21.7 | -- | -- | -- | -- |
| 959.32 | 1.45 | 6.34 | -3.65 | 2.22 | -- | -- | -- | -1.95 | 21.5 | -- | -- | -- | -- |
| 884.53 | 1.39 | 6.32 | -4.36 | -- | 3.72 | -- | -- | -2.17 | -- | 25 | 720 | 12.7 | -- |
| 1241.48 | 1.64 | 6.2 | -- | 1.85 | 1.54 | -- | -- | -1.39 | 21.5 | 28.6 | 859 | 15.4 | -- |
| 1249.11 | 1.65 | 6.28 | -3.64 | -- | -- | -- | -- | -1.95 | -- | -- | -- | -- | -- |
| 1310.62 | 1.69 | 6.25 | -- | 2.21 | -- | -- | -- | -1.54 | 21.4 | -- | -- | -- | -- |
| 1353.53 | 1.71 | 6.22 | -- | -- | 3.27 | -- | -- | -1.67 | -- | 24.99 | 534 | 9.68 | -- |
| 1597.68 | 1.87 | 6.19 | -- | -- | -- | -- | -- | -1.55 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 684.47 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 5 | 3 |
| 5 | 690.14 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 4 | 6 |
| 6 | 690.56 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 8 | 6 |
| 12 | 692.59 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 4 | 3 |
| 18 | 693.20 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 3 | 5 |
| 40 | 695.43 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 3 | 8 |
| 51 | 696.09 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 8 | 6 |
| 52 | 696.09 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 8 | 6 |
| 57 | 696.36 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 95 | 698.26 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 6 | 10 |
| 115 | 699.27 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 6 | 8 |
| 116 | 699.27 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 6 | 8 |
| 122 | 699.45 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 6 | 10 |
| 123 | 699.45 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 6 | 10 |
| 127 | 699.61 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 10 | 6 |
| 141 | 699.92 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 10 | 8 |
| 185 | 700.90 | wind | 3.0 | 43200 | > th | dose independent | rect. | 4 | 2 |
| 186 | 700.90 | wind | 3.0 | 43200 | > th | dose dependent | sin | 6 | NA |
| 203 | 701.27 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 10 | 1 |
| 262 | 702.48 | wind | 5.0 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 268 | 702.58 | wind | 3.0 | 43200 | < th | dose independent | rect. | 4 | 2 |
| 284 | 702.89 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 10 | 1 |
| 297 | 703.11 | wind | 3.0 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 307 | 703.33 | wind | 3.0 | 43200 | > th | dose independent | rect. | 4 | 5 |
| 318 | 703.52 | wind | 9.0 | 43200 | < th | dose independent | rect. | 20 | 17 |
| 343 | 703.95 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 9 | 10 |
| 356 | 704.25 | wind | 3.0 | 43200 | > th | dose independent | rect. | 3 | 8 |
| 372 | 704.51 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 12 | 7 |
| 374 | 704.55 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 9 | 5 |
| 381 | 704.63 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 391 | 704.73 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 20 | 14 |
| 431 | 705.16 | temperature | 10.0 | 14400 | > th | dose dependent | sin | 21 | NA |
| 473 | 705.72 | wind | 5.0 | 43200 | < th | dose independent | rect. | 5 | 5 |
| 530 | 706.35 | wind | 9.0 | 43200 | > th | dose independent | rect. | 20 | 17 |
| 594 | 707.13 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 618 | 707.49 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 15 | 1 |
| 623 | 707.62 | temperature | 30.0 | 14400 | < th | dose dependent | sin | 21 | NA |
| 682 | 708.25 | wind | 3.0 | 43200 | < th | dose independent | rect. | 3 | 8 |
| 805 | 709.91 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 19 | 6 |
| 866 | 710.67 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 19 | 18 |
| 942 | 711.69 | wind | 5.0 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 950 | 711.78 | wind | 9.0 | 43200 | < th | dose independent | rect. | 9 | 4 |
| 977 | 712.13 | wind | 9.0 | 43200 | < th | dose dependent | sin | 7 | NA |