BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0781400 Os02g0781400|AK073762
(255 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G20720.1 | chr5:7015015-7016354 FORWARD LENGTH=254 328 2e-90
AT1G14980.1 | chr1:5165930-5166654 REVERSE LENGTH=99 59 3e-09
AT2G44650.1 | chr2:18419521-18420510 REVERSE LENGTH=140 58 6e-09
AT1G23100.1 | chr1:8195867-8196336 FORWARD LENGTH=98 57 1e-08
AT3G60210.1 | chr3:22251443-22252709 REVERSE LENGTH=139 54 8e-08
>AT5G20720.1 | chr5:7015015-7016354 FORWARD LENGTH=254
Length = 253
Score = 328 bits (841), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 168/244 (68%), Positives = 201/244 (82%), Gaps = 13/244 (5%)
Query: 19 KGMASRDALRLPPPAAVRV-------LRQAPRPSRGLVVRAAAASVAPKYTTLKPLADRV 71
+ +AS D LR ++V+ LRQ+ R LVV+AA+ VAPKYT++KPL DRV
Sbjct: 16 RSLASLDGLR---ASSVKFSSLKPGTLRQSQ--FRRLVVKAASV-VAPKYTSIKPLGDRV 69
Query: 72 LVKIKSAEQKTTGGILLPSAAQSKPQGGEVVAIGEGRTVGDNKVEVSIQVGSQVVYSKYA 131
LVKIK AE+KT GGILLPS AQSKPQGGEVVA+GEGRT+G NK+++++ G+Q++YSKYA
Sbjct: 70 LVKIKEAEEKTLGGILLPSTAQSKPQGGEVVAVGEGRTIGKNKIDITVPTGAQIIYSKYA 129
Query: 132 GTEVELNDSNHLILKEDDIIGILETDDAKDMKPLSDRVLIKVAEAEDKTPGGLLLTETTK 191
GTEVE ND HLILKEDDI+GILET+D KD+KPL+DRV IKVAEAE+KT GGLLLTETTK
Sbjct: 130 GTEVEFNDVKHLILKEDDIVGILETEDIKDLKPLNDRVFIKVAEAEEKTAGGLLLTETTK 189
Query: 192 EKPSIGTVVAVGPGPLDEEGKRIPLSVSAGSTVLYSKYAGSEFKGSDGTSYIVLRVSDLM 251
EKPSIGTV+AVGPG LDEEGK PL VS GSTVLYSKYAG++FKG DG++YI LR SD+M
Sbjct: 190 EKPSIGTVIAVGPGSLDEEGKITPLPVSTGSTVLYSKYAGNDFKGKDGSNYIALRASDVM 249
Query: 252 AVLS 255
A+LS
Sbjct: 250 AILS 253
>AT1G14980.1 | chr1:5165930-5166654 REVERSE LENGTH=99
Length = 98
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 55/96 (57%), Gaps = 2/96 (2%)
Query: 160 KDMKPLSDRVLIKVAEAEDKTPGGLLLTETTKEKPSIGTVVAVGPGPLDEEGKRIPLSVS 219
K + P +R+L++ KT G+LL E + + S G V+AVGPG D++GK IP+SV
Sbjct: 3 KRLIPTFNRILVQRVIQPAKTESGILLPEKSSKLNS-GKVIAVGPGSRDKDGKLIPVSVK 61
Query: 220 AGSTVLYSKYAGSEFKGSDGTSYIVLRVSDLMAVLS 255
G TVL +Y G++ K + Y + R D++ L
Sbjct: 62 EGDTVLLPEYGGTQVKLGE-NEYHLFRDEDVLGTLH 96
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 57/95 (60%), Gaps = 2/95 (2%)
Query: 64 LKPLADRVLVKIKSAEQKTTGGILLPSAAQSKPQGGEVVAIGEGRTVGDNK-VEVSIQVG 122
L P +R+LV+ KT GILLP + SK G+V+A+G G D K + VS++ G
Sbjct: 5 LIPTFNRILVQRVIQPAKTESGILLPEKS-SKLNSGKVIAVGPGSRDKDGKLIPVSVKEG 63
Query: 123 SQVVYSKYAGTEVELNDSNHLILKEDDIIGILETD 157
V+ +Y GT+V+L ++ + + +++D++G L D
Sbjct: 64 DTVLLPEYGGTQVKLGENEYHLFRDEDVLGTLHED 98
>AT2G44650.1 | chr2:18419521-18420510 REVERSE LENGTH=140
Length = 139
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 64/116 (55%), Gaps = 14/116 (12%)
Query: 45 SRGLVVRAAAASVAPKYTTLKPLADRVLVKIKSAEQKTTGGILLPSAA--QSKPQGGEVV 102
SR +R A S + T + P ADRVLV+++ K++GG+LLP AA + GE++
Sbjct: 33 SRRGCLRIKAISTKWEPTKVVPQADRVLVRLEDLPIKSSGGVLLPKAAVKFERYLTGEII 92
Query: 103 AIGEGRTVGDNKVEVSIQV--GSQVVYSKYAGTEVEL-NDSNHLILKEDDIIGILE 155
++G EV QV G +V++S + EV+L D+ H KE D++ ++E
Sbjct: 93 SVGS---------EVGQQVGPGKRVLFSDVSAYEVDLGTDARHCFCKESDLLALVE 139
>AT1G23100.1 | chr1:8195867-8196336 FORWARD LENGTH=98
Length = 97
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 54/97 (55%), Gaps = 2/97 (2%)
Query: 159 AKDMKPLSDRVLIKVAEAEDKTPGGLLLTETTKEKPSIGTVVAVGPGPLDEEGKRIPLSV 218
AK + P +RVL++ KT G+LL E + + S G V+AVGPG D G IP+SV
Sbjct: 2 AKRLIPTLNRVLVEKILPPSKTVSGILLPEKSSQLNS-GRVIAVGPGARDRAGNLIPVSV 60
Query: 219 SAGSTVLYSKYAGSEFKGSDGTSYIVLRVSDLMAVLS 255
G VL ++ G++ K + +++ R D+MA L
Sbjct: 61 KEGDNVLLPEFGGTQVKLGE-KEFLLYRDEDIMATLH 96
Score = 53.9 bits (128), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 2/93 (2%)
Query: 64 LKPLADRVLVKIKSAEQKTTGGILLPSAAQSKPQGGEVVAIGEG-RTVGDNKVEVSIQVG 122
L P +RVLV+ KT GILLP + S+ G V+A+G G R N + VS++ G
Sbjct: 5 LIPTLNRVLVEKILPPSKTVSGILLPEKS-SQLNSGRVIAVGPGARDRAGNLIPVSVKEG 63
Query: 123 SQVVYSKYAGTEVELNDSNHLILKEDDIIGILE 155
V+ ++ GT+V+L + L+ +++DI+ L
Sbjct: 64 DNVLLPEFGGTQVKLGEKEFLLYRDEDIMATLH 96
>AT3G60210.1 | chr3:22251443-22252709 REVERSE LENGTH=139
Length = 138
Score = 53.9 bits (128), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 61/110 (55%), Gaps = 12/110 (10%)
Query: 50 VRAAAASVAPKYTTLKPLADRVLVKIKSAEQKTTGGILLPSAA--QSKPQGGEVVAIGEG 107
R A S + + P ADRVLV+++ +K++GG+LLP +A + GEVV++G
Sbjct: 37 FRINAVSTKWEPAKVVPQADRVLVRLEVLPEKSSGGVLLPKSAVKFERYLTGEVVSVGS- 95
Query: 108 RTVGDNKVEVSIQVGSQVVYSKYAGTEVEL--NDSNHLILKEDDIIGILE 155
VG+ ++ G +V++S + EV+ D+ H KE D++ I++
Sbjct: 96 -EVGE------VEPGKKVLFSDMSAYEVDFGTEDAKHCFCKESDLLAIVQ 138
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.311 0.131 0.351
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,133,894
Number of extensions: 222674
Number of successful extensions: 435
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 428
Number of HSP's successfully gapped: 7
Length of query: 255
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 159
Effective length of database: 8,474,633
Effective search space: 1347466647
Effective search space used: 1347466647
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 110 (47.0 bits)