Os09g0438700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 20 kDa chaperonin, chloroplast precursor (Protein Cpn21) (Chloroplast protein Cpn10) (Chloroplast chaperonin 10) (Ch-CPN10) (Chaperonin 20).
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Os09g0438700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 20 kDa chaperonin, chloroplast precursor (Protein Cpn21) (Chloroplast protein Cpn10) (Chloroplast chaperonin 10) (Ch-CPN10) (Chaperonin 20).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 118.58 | 0.512 | 13.6 | 1.21 | 1.69 | 2.2 | -0.461 | -2.34 | 0.403 | 19.2 | 24.1 | 10 | -- | -- |
| 121 | 0.516 | 13.5 | 1.52 | 1.72 | 2.01 | -0.489 | -- | 0.499 | 19.1 | 24 | 10 | -- | -- |
| 118.59 | 0.511 | 13.6 | 1.22 | 1.71 | 2.2 | -- | -2.38 | 0.406 | 19.2 | 24.1 | 10 | -- | -- |
| 121.57 | 0.517 | 13.5 | 1.54 | 1.71 | 2.01 | -- | -- | 0.505 | 19.1 | 24.09 | 9 | -- | -- |
| 218.63 | 0.689 | 13.6 | 0.678 | -- | 3.09 | -- | -4.9 | 0.225 | -- | 24.1 | 228 | -- | -- |
| 182.37 | 0.633 | 13.5 | 1.86 | 2.17 | -- | 0.025 | -- | 0.739 | 17.8 | -- | -- | -- | -- |
| 182.37 | 0.632 | 13.5 | 1.86 | 2.17 | -- | -- | -- | 0.739 | 17.8 | -- | -- | -- | -- |
| 229.1 | 0.705 | 13.5 | 1.35 | -- | 2.67 | -- | -- | 0.409 | -- | 24.02 | 221 | -- | -- |
| 178.15 | 0.622 | 13.6 | -- | 1.69 | 2.36 | -- | -- | 0.22 | 19.5 | 22.69 | 3 | -- | -- |
| 427.62 | 0.966 | 13.4 | 1.79 | -- | -- | -- | -- | 0.688 | -- | -- | -- | -- | -- |
| 273.28 | 0.773 | 13.5 | -- | 2.15 | -- | -- | -- | 0.532 | 17.9 | -- | -- | -- | -- |
| 274.91 | 0.772 | 13.5 | -- | -- | 2.89 | -- | -- | 0.202 | -- | 23.54 | 221 | -- | -- |
| 512.2 | 1.06 | 13.5 | -- | -- | -- | -- | -- | 0.49 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 106.73 | temperature | 20 | 90 | > th | dose dependent | sin | 2 | NA |
| 4 | 107.93 | temperature | 30 | 90 | < th | dose dependent | sin | 1 | NA |
| 5 | 108.33 | temperature | 10 | 90 | > th | dose dependent | sin | 2 | NA |
| 68 | 115.20 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 15 |
| 82 | 116.72 | temperature | 20 | 270 | > th | dose dependent | rect. | 5 | 9 |
| 104 | 117.88 | temperature | 25 | 10 | > th | dose dependent | rect. | 7 | 16 |
| 145 | 119.55 | temperature | 25 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 164 | 119.85 | temperature | 25 | 10 | > th | dose dependent | rect. | 24 | 23 |
| 189 | 120.26 | temperature | 25 | 10 | > th | dose dependent | no | NA | NA |
| 242 | 121.18 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 8 |
| 245 | 121.22 | temperature | 25 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 256 | 121.37 | temperature | 25 | 10 | > th | dose dependent | rect. | 7 | 9 |
| 281 | 121.75 | temperature | 25 | 270 | > th | dose independent | sin | 3 | NA |
| 295 | 122.07 | temperature | 25 | 30 | > th | dose dependent | rect. | 7 | 7 |
| 332 | 122.71 | temperature | 25 | 10 | > th | dose dependent | rect. | 20 | 20 |
| 340 | 122.76 | temperature | 25 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 352 | 122.85 | temperature | 25 | 270 | < th | dose independent | sin | 3 | NA |
| 389 | 123.31 | temperature | 25 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 401 | 123.55 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 449 | 124.10 | temperature | 25 | 270 | < th | dose independent | rect. | 2 | 11 |
| 566 | 125.02 | temperature | 25 | 270 | < th | dose independent | rect. | 2 | 16 |
| 685 | 126.09 | temperature | 30 | 10 | < th | dose dependent | rect. | 6 | 14 |
| 816 | 127.03 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 21 |
| 902 | 127.60 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 10 |