BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0775100 Os02g0775100|AK110750
(204 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0775100 Similar to Cation diffusion facilitator 8 393 e-110
Os03g0226400 Similar to Cation diffusion facilitator 8 299 1e-81
Os01g0130000 Cation efflux protein family protein 213 6e-56
Os01g0837800 Similar to Cation diffusion facilitator 8 212 1e-55
Os05g0461900 Cation efflux protein family protein 159 1e-39
AK108242 120 8e-28
AK107653 72 2e-13
>Os02g0775100 Similar to Cation diffusion facilitator 8
Length = 204
Score = 393 bits (1009), Expect = e-110, Method: Compositional matrix adjust.
Identities = 190/204 (93%), Positives = 190/204 (93%)
Query: 1 QLVENKAGEKMTPEQLIWLYSIMLSATVVKLALYIYCRSSGNSIVQAYAKDHYFDXXXXX 60
QLVENKAGEKMTPEQLIWLYSIMLSATVVKLALYIYCRSSGNSIVQAYAKDHYFD
Sbjct: 1 QLVENKAGEKMTPEQLIWLYSIMLSATVVKLALYIYCRSSGNSIVQAYAKDHYFDVVTNV 60
Query: 61 XXXXXXXXXDKFFWWIDPVGAVLLAVYTIVNWSGTVYENAVTLVGQCAPSDMLQKLTYLA 120
DKFFWWIDPVGAVLLAVYTIVNWSGTVYENAVTLVGQCAPSDMLQKLTYLA
Sbjct: 61 VGLVAAVLGDKFFWWIDPVGAVLLAVYTIVNWSGTVYENAVTLVGQCAPSDMLQKLTYLA 120
Query: 121 MKHDPRVRRVDTVRAYSFGALYFVEVDIELSEDMRLGEAHSIGESLQDKIEKLPEVERAF 180
MKHDPRVRRVDTVRAYSFGALYFVEVDIELSEDMRLGEAHSIGESLQDKIEKLPEVERAF
Sbjct: 121 MKHDPRVRRVDTVRAYSFGALYFVEVDIELSEDMRLGEAHSIGESLQDKIEKLPEVERAF 180
Query: 181 VHVDFESTHKPEHRVRSRLPSTEP 204
VHVDFESTHKPEHRVRSRLPSTEP
Sbjct: 181 VHVDFESTHKPEHRVRSRLPSTEP 204
>Os03g0226400 Similar to Cation diffusion facilitator 8
Length = 441
Score = 299 bits (765), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 137/204 (67%), Positives = 168/204 (82%)
Query: 1 QLVENKAGEKMTPEQLIWLYSIMLSATVVKLALYIYCRSSGNSIVQAYAKDHYFDXXXXX 60
+L+ N+ +K+TP QL WLYSIM+ ATVVKLAL++YCR+SGN IV+AYAKDHYFD
Sbjct: 238 KLIVNETPDKLTPVQLTWLYSIMIFATVVKLALWLYCRTSGNKIVRAYAKDHYFDVVTNV 297
Query: 61 XXXXXXXXXDKFFWWIDPVGAVLLAVYTIVNWSGTVYENAVTLVGQCAPSDMLQKLTYLA 120
D F+WWIDPVGA+ LAVYTI NWSGTV+ENAV+LVG+ AP +MLQKLTYLA
Sbjct: 298 VGLAAAVLGDMFYWWIDPVGAIALAVYTITNWSGTVWENAVSLVGESAPPEMLQKLTYLA 357
Query: 121 MKHDPRVRRVDTVRAYSFGALYFVEVDIELSEDMRLGEAHSIGESLQDKIEKLPEVERAF 180
++H P+++RVDTVRAY+FG LYFVEVDIEL E++ L EAH+IGESLQ KIE+LPEVERAF
Sbjct: 358 IRHHPQIKRVDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQIKIEELPEVERAF 417
Query: 181 VHVDFESTHKPEHRVRSRLPSTEP 204
VH+DFE HKPEH + S+LPS++P
Sbjct: 418 VHLDFECDHKPEHNILSKLPSSQP 441
>Os01g0130000 Cation efflux protein family protein
Length = 391
Score = 213 bits (543), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 100/178 (56%), Positives = 124/178 (69%)
Query: 17 IWLYSIMLSATVVKLALYIYCRSSGNSIVQAYAKDHYFDXXXXXXXXXXXXXXDKFFWWI 76
+W+ M S VVK L +YCRS N IV+AYA+DH+FD ++ WW+
Sbjct: 211 LWMIGSMSSVAVVKFFLMLYCRSFKNEIVRAYAQDHFFDVITNSVGLVSALLAVRYKWWM 270
Query: 77 DPVGAVLLAVYTIVNWSGTVYENAVTLVGQCAPSDMLQKLTYLAMKHDPRVRRVDTVRAY 136
DPVGA+L+AVYTI W+ TV EN TL+G+ AP++ L KLTYL H +R +DTVRAY
Sbjct: 271 DPVGAILIAVYTITTWARTVVENVGTLIGRSAPAEYLTKLTYLIWNHHEEIRHIDTVRAY 330
Query: 137 SFGALYFVEVDIELSEDMRLGEAHSIGESLQDKIEKLPEVERAFVHVDFESTHKPEHR 194
+FG YFVEVDI L DM L AH IGESLQ+K+E+LPEVERAFVHVDFE TH+PEH+
Sbjct: 331 TFGTHYFVEVDIVLPGDMPLSHAHDIGESLQEKLEQLPEVERAFVHVDFEFTHRPEHK 388
>Os01g0837800 Similar to Cation diffusion facilitator 8
Length = 415
Score = 212 bits (540), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 103/183 (56%), Positives = 128/183 (69%)
Query: 11 MTPEQLIWLYSIMLSATVVKLALYIYCRSSGNSIVQAYAKDHYFDXXXXXXXXXXXXXXD 70
+T EQ W+ IML+ T+VKLAL +YCR+ N IV+AYA+DH+FD
Sbjct: 227 LTKEQEKWVVDIMLAVTLVKLALVLYCRTFTNEIVKAYAQDHFFDVITNMIGLVAALLAT 286
Query: 71 KFFWWIDPVGAVLLAVYTIVNWSGTVYENAVTLVGQCAPSDMLQKLTYLAMKHDPRVRRV 130
WIDPVGA++LA+YTI WS TV EN +LVGQ A + LQKLTYL H VR +
Sbjct: 287 YIEGWIDPVGAIILAIYTIRTWSMTVLENVHSLVGQSASPEYLQKLTYLCWNHHKAVRHI 346
Query: 131 DTVRAYSFGALYFVEVDIELSEDMRLGEAHSIGESLQDKIEKLPEVERAFVHVDFESTHK 190
DTVRAY+FG+ YFVEVDI L M L EAH IGE+LQ+K+E+LPE+ERAFVH+D+E TH+
Sbjct: 347 DTVRAYTFGSHYFVEVDIVLPSSMPLQEAHDIGEALQEKLERLPEIERAFVHLDYEFTHR 406
Query: 191 PEH 193
PEH
Sbjct: 407 PEH 409
>Os05g0461900 Cation efflux protein family protein
Length = 376
Score = 159 bits (403), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 89/184 (48%), Positives = 106/184 (57%), Gaps = 39/184 (21%)
Query: 10 KMTPEQLIWLYSIMLSATVVKLALYIYCRSSGNSIVQAYAKDHYFDXXXXXXXXXXXXXX 69
++T EQ W+ IMLS T VKL L +YCRS N I
Sbjct: 225 RLTKEQEKWVVDIMLSVTSVKLLLVVYCRSFTNEI------------------------- 259
Query: 70 DKFFWWIDPVGAVLLAVYTIVNWSGTVYENAVTLVGQCAPSDMLQKLTYLAMKHDPRVRR 129
LA+YTI WS TV EN +LVGQ A + LQKLTYL H VR
Sbjct: 260 --------------LAIYTIRTWSMTVLENVHSLVGQSASPEYLQKLTYLCWNHHKAVRH 305
Query: 130 VDTVRAYSFGALYFVEVDIELSEDMRLGEAHSIGESLQDKIEKLPEVERAFVHVDFESTH 189
+DTVRAY+FG+ YFVEVDI L DM L EAH IGE+ Q+K+E LPE+ERAFVH+D+E TH
Sbjct: 306 IDTVRAYTFGSHYFVEVDIVLPCDMPLQEAHDIGEAPQEKLESLPEIERAFVHLDYEFTH 365
Query: 190 KPEH 193
+PEH
Sbjct: 366 QPEH 369
>AK108242
Length = 537
Score = 120 bits (300), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 63/164 (38%), Positives = 92/164 (56%)
Query: 31 LALYIYCRSSGNSIVQAYAKDHYFDXXXXXXXXXXXXXXDKFFWWIDPVGAVLLAVYTIV 90
LA+Y Y +S V+ +DH D WIDP GA++++V IV
Sbjct: 371 LAIYCYGLRKYSSQVEVLYQDHRNDLFINGFGIFTSAAGATIAGWIDPAGALIISVAIIV 430
Query: 91 NWSGTVYENAVTLVGQCAPSDMLQKLTYLAMKHDPRVRRVDTVRAYSFGALYFVEVDIEL 150
+W+ T + TL G AP+D LQ +TY A ++ +++VRAYS G Y VE+DI +
Sbjct: 431 SWTRTAFGEFKTLAGAAAPTDFLQLVTYNAALFSDEIQAIESVRAYSSGPRYIVEIDIVM 490
Query: 151 SEDMRLGEAHSIGESLQDKIEKLPEVERAFVHVDFESTHKPEHR 194
+ L ++H + ++LQD++E LP VERAF+HVD E H EHR
Sbjct: 491 HPETPLWKSHDLSQALQDQLESLPMVERAFIHVDHEVEHAFEHR 534
>AK107653
Length = 785
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 83/177 (46%), Gaps = 8/177 (4%)
Query: 21 SIMLSATVVKLALYIYCRSSGNSIVQAYAKDHYFDXXXXXXXXXXXXXXDKFFW-WIDPV 79
+ ML+ +K +++ RSS +S V+A ++D D + W +DP+
Sbjct: 608 AFMLATIGIKTVMWLLYRSSKSSGVRAVSQDAENDVVFNIASLIFPIVGSRLGWPALDPI 667
Query: 80 GAVLLAVYTIVNWSGTVYENAVTLVGQCAPSDMLQKLTYLAMKHDPRVRRVDTVRAYSF- 138
G + L++Y I W T++E L G A + + K Y + R V++V A+
Sbjct: 668 GGIALSIYIIYEWIETLWETVSKLSGAVASATEISKCLYCVV----RFNSVNSVSAFELF 723
Query: 139 --GALYFVEVDIELSEDMRLGEAHSIGESLQDKIEKLPEVERAFVHVDFESTHKPEH 193
G VE DI L + L E+H +GE + E + VER+++H+D+ + H
Sbjct: 724 HSGDNLIVEADIVLPHSISLKESHDLGEIITYCTENITGVERSYIHLDYNPKGQAGH 780
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.135 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,977,461
Number of extensions: 206349
Number of successful extensions: 443
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 440
Number of HSP's successfully gapped: 7
Length of query: 204
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 108
Effective length of database: 12,023,257
Effective search space: 1298511756
Effective search space used: 1298511756
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 153 (63.5 bits)