Os01g0130000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cation efflux protein family protein.
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Os01g0130000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cation efflux protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 83.38 | 0.429 | 10.3 | 1.06 | 0.0772 | -1.68 | 1.04 | 2.23 | 0.168 | 15.9 | 26.31 | 1206 | -- | -- |
| 86.99 | 0.434 | 10.4 | 0.645 | 0.0679 | -1.55 | 1.06 | -- | 0.184 | 16.3 | 25.6 | 2475 | -- | -- |
| 84.22 | 0.427 | 10.4 | 0.813 | 0.23 | -1.53 | -- | 1.21 | 0.0838 | 11.3 | 26.65 | 1211 | -- | -- |
| 84.74 | 0.429 | 10.4 | 0.553 | 0.196 | -1.44 | -- | -- | 0.0707 | 11.1 | 26.4 | 1197 | -- | -- |
| 86.21 | 0.432 | 10.4 | 0.836 | -- | -1.69 | -- | 1.29 | 0.121 | -- | 26.1 | 1135 | -- | -- |
| 161.67 | 0.596 | 10.4 | 0.0927 | 0.462 | -- | 0.748 | -- | 0.00319 | 12.7 | -- | -- | -- | -- |
| 163.7 | 0.599 | 10.4 | 0.119 | 0.465 | -- | -- | -- | 0.00537 | 12.1 | -- | -- | -- | -- |
| 86.81 | 0.434 | 10.4 | 0.561 | -- | -1.55 | -- | -- | 0.0798 | -- | 26.05 | 1142 | -- | -- |
| 92.2 | 0.447 | 10.4 | -- | 0.222 | -1.35 | -- | -- | -0.00213 | 11.2 | 26.46 | 1195 | -- | -- |
| 177.31 | 0.622 | 10.4 | 0.104 | -- | -- | -- | -- | -0.00123 | -- | -- | -- | -- | -- |
| 164.08 | 0.599 | 10.4 | -- | 0.463 | -- | -- | -- | -0.00784 | 12 | -- | -- | -- | -- |
| 94.53 | 0.453 | 10.4 | -- | -- | -1.43 | -- | -- | -0.0254 | -- | 26.57 | 1137 | -- | -- |
| 177.6 | 0.622 | 10.4 | -- | -- | -- | -- | -- | -0.0128 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 87.45 | temperature | 25 | 14400 | > th | dose dependent | rect. | 18 | 5 |
| 9 | 87.83 | temperature | 30 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 14 | 88.16 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 17 | 88.25 | temperature | 25 | 1440 | > th | dose dependent | rect. | 17 | 19 |
| 24 | 88.42 | temperature | 25 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 46 | 88.79 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 64 | 88.93 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 20 |
| 66 | 88.96 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 18 |
| 84 | 89.05 | temperature | 25 | 14400 | < th | dose independent | rect. | 19 | 2 |
| 89 | 89.06 | temperature | 25 | 1440 | > th | dose dependent | sin | 4 | NA |
| 124 | 89.15 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 125 | 89.15 | temperature | 25 | 1440 | > th | dose dependent | rect. | 22 | 23 |
| 133 | 89.17 | temperature | 25 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 153 | 89.24 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 9 |
| 188 | 89.36 | temperature | 30 | 1440 | > th | dose independent | rect. | 16 | 20 |
| 250 | 89.53 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 23 |
| 255 | 89.54 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 13 |
| 256 | 89.54 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 15 |
| 257 | 89.55 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 10 |
| 262 | 89.55 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 18 |
| 318 | 89.74 | temperature | 30 | 1440 | < th | dose independent | sin | 2 | NA |
| 336 | 89.81 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 18 |
| 337 | 89.81 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 22 |
| 339 | 89.82 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 13 |
| 343 | 89.82 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 17 |
| 347 | 89.82 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 18 |
| 356 | 89.82 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 21 |
| 363 | 89.83 | temperature | 30 | 1440 | < th | dose independent | no | NA | NA |
| 364 | 89.83 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 372 | 89.83 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 15 |
| 401 | 89.83 | temperature | 30 | 1440 | < th | dose independent | rect. | 23 | 21 |
| 411 | 89.83 | temperature | 30 | 1440 | < th | dose independent | rect. | 20 | 23 |
| 471 | 89.89 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 10 |
| 472 | 89.89 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 12 |
| 475 | 89.90 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 4 |
| 476 | 89.90 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 6 |
| 477 | 89.90 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 7 |
| 484 | 89.90 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 17 |
| 492 | 89.92 | temperature | 30 | 1440 | < th | dose independent | rect. | 20 | 17 |
| 495 | 89.93 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 11 |
| 503 | 89.95 | temperature | 30 | 1440 | < th | dose independent | rect. | 23 | 14 |
| 506 | 89.97 | temperature | 30 | 14400 | < th | dose independent | sin | 12 | NA |
| 530 | 90.01 | temperature | 25 | 14400 | > th | dose dependent | sin | 12 | NA |
| 536 | 90.03 | temperature | 30 | 14400 | > th | dose independent | rect. | 15 | 4 |
| 573 | 90.14 | temperature | 30 | 1440 | > th | dose independent | no | NA | NA |
| 679 | 90.16 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 21 |
| 680 | 90.17 | temperature | 30 | 1440 | > th | dose independent | sin | 0 | NA |
| 685 | 90.18 | temperature | 30 | 14400 | > th | dose independent | sin | 13 | NA |
| 799 | 90.38 | temperature | 30 | 14400 | > th | dose independent | rect. | 14 | 21 |
| 865 | 90.50 | temperature | 25 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 868 | 90.51 | temperature | 25 | 720 | > th | dose dependent | sin | 12 | NA |
| 892 | 90.54 | temperature | 30 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 894 | 90.54 | temperature | 30 | 14400 | > th | dose dependent | rect. | 13 | 6 |
| 908 | 90.55 | temperature | 30 | 14400 | < th | dose independent | rect. | 16 | 1 |