BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0768000 Os02g0768000|AK106634
         (405 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0768000  Conserved hypothetical protein                      724   0.0  
Os09g0454200  Conserved hypothetical protein                      163   2e-40
Os05g0373500  Conserved hypothetical protein                      136   3e-32
Os01g0938600  Conserved hypothetical protein                      128   8e-30

>Os02g0768000 Conserved hypothetical protein
          Length = 405

 Score =  724 bits (1870), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/405 (89%), Positives = 361/405 (89%)

Query: 1   MGKAGDAEQAVHSTAPAAGHGSAVRRYAATIGGAVDAKCVLVLFLSIGXXXXXXXXXXXX 60
           MGKAGDAEQAVHSTAPAAGHGSAVRRYAATIGGAVDAKCVLVLFLSIG            
Sbjct: 1   MGKAGDAEQAVHSTAPAAGHGSAVRRYAATIGGAVDAKCVLVLFLSIGVFVLVLFMLLPL 60

Query: 61  HDHASETIPDDDPGVLPGEIQASFFLLKKRQQLIPHVRRLQKDIYREIGIPNTTVSVSMH 120
           HDHASETIPDDDPGVLPGEIQASFFLLKKRQQLIPHVRRLQKDIYREIGIPNTTVSVSMH
Sbjct: 61  HDHASETIPDDDPGVLPGEIQASFFLLKKRQQLIPHVRRLQKDIYREIGIPNTTVSVSMH 120

Query: 121 TSKYKDSTYVKFGILPNPRNSSISAQSIIALRKNLIQLTLEQSNLSLTSSVFGDPHCLEI 180
           TSKYKDSTYVKFGILPNPRNSSISAQSIIALRKNLIQLTLEQSNLSLTSSVFGDPHCLEI
Sbjct: 121 TSKYKDSTYVKFGILPNPRNSSISAQSIIALRKNLIQLTLEQSNLSLTSSVFGDPHCLEI 180

Query: 181 LGFPGGITVPPPPDGNICPTALFNVTLNMTIQQLRVHLKELESELRIILQLTPYEDLIVE 240
           LGFPGGITVPPPPDGNICPTALFNVTLNMTIQQLRVHLKELESELRIILQLTPYEDLIVE
Sbjct: 181 LGFPGGITVPPPPDGNICPTALFNVTLNMTIQQLRVHLKELESELRIILQLTPYEDLIVE 240

Query: 241 ITNENGSTINLPVTVHILIAPNYPSNYLETYRXXXXXXXXXXXXPKNLDLNPIFGMIENL 300
           ITNENGSTINLPVTVHILIAPNYPSNYLETYR            PKNLDLNPIFGMIENL
Sbjct: 241 ITNENGSTINLPVTVHILIAPNYPSNYLETYRLKQLAQIIIKLIPKNLDLNPIFGMIENL 300

Query: 301 WLSPCLQSYIXXXXXXXXXXXXXXXXXXXXEHPQPTTTKPYGSFSCPALERRKTVSVHRR 360
           WLSPCLQSYI                    EHPQPTTTKPYGSFSCPALERRKTVSVHRR
Sbjct: 301 WLSPCLQSYIPSCAPNPAPAPAPSLSPSNPEHPQPTTTKPYGSFSCPALERRKTVSVHRR 360

Query: 361 LSTISPMMVPPEIPTRFDSWSVHTDRKNRSPLAKPMSLVPASPSK 405
           LSTISPMMVPPEIPTRFDSWSVHTDRKNRSPLAKPMSLVPASPSK
Sbjct: 361 LSTISPMMVPPEIPTRFDSWSVHTDRKNRSPLAKPMSLVPASPSK 405



>Os09g0454200 Conserved hypothetical protein
          Length = 489

 Score =  163 bits (413), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 109/282 (38%), Positives = 152/282 (53%), Gaps = 7/282 (2%)

Query: 31  IGGAVDAKCVLVLFLSIGXXXXXXXXXXXXHDHASETIPDDDPGVLPGEIQASFFLLKKR 90
           IG A   +CV VL LS+G              H   +   DDP VL  EIQ  F L K  
Sbjct: 35  IGRAASFRCVFVLALSVGVLVSALLLLVPTRGHGFLS---DDPVVLGAEIQVGFTLEKPV 91

Query: 91  QQLIPHVRRLQKDIYREIGIPNTTVS-VSMHTSKYKDSTYVKFGILPNPRNSSISAQSII 149
             L  H+ +L  DI+ EIGIPN+ VS VSM +   K ST V F +LP+P+ +SIS  ++ 
Sbjct: 92  SFLAAHMDKLGGDIFEEIGIPNSKVSIVSMRSLTSKYSTNVVFSVLPSPKEASISLPALS 151

Query: 150 ALRKNLIQLTLEQSNLSLTSSVFGDPHCLEILGFPGGITVPPPPDGNICPTALFNVTLNM 209
            LR +LI + L Q NLSLT  +FG P  +E+L FPGGITV P   G++    LFN  LN 
Sbjct: 152 VLRSSLIAMMLNQVNLSLTEPLFGHPSSVELLRFPGGITVIPEQSGSVWADPLFNFVLNN 211

Query: 210 TIQQLRVHLKELESELRIILQLTPYEDLIVEITNENGSTINLPVTVHILIAPNYPSNYLE 269
           +I Q+  ++ EL+ +L++ L L  YE + ++  NE GS+++ P T+   +     S+ L 
Sbjct: 212 SIYQILGNITELKDQLKLGLNLRSYEKVYLQFRNEIGSSVDAPATIEASVLDG--SSILL 269

Query: 270 TYRXXXXXXXXXXXXPKNLDLN-PIFGMIENLWLSPCLQSYI 310
            YR             +NL LN  +FG ++ + LS  LQ  I
Sbjct: 270 PYRLKQLAQLIKEPNARNLGLNHSVFGKVKGVQLSSYLQHSI 311



>Os05g0373500 Conserved hypothetical protein
          Length = 225

 Score =  136 bits (342), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 77/184 (41%), Positives = 110/184 (59%), Gaps = 3/184 (1%)

Query: 76  LPGEIQASFFLLKKRQQLIPHVRRLQKDIYREIGIPNTTVSVS-MHTSKYKDSTYVKFGI 134
              +I ASF L K   +L     +L+ DIY EIGIPN+TV+V+ +      + T V F I
Sbjct: 32  FAADIVASFMLQKTVSELSGSTSKLEFDIYGEIGIPNSTVAVNFLQPIGAPNWTNVIFSI 91

Query: 135 LPNPRNSSISAQSIIALRKNLIQLTLEQSNLSLTSSVFGDPHCLEILGFPGGITVPPPPD 194
           +P P+ SSIS+  +  LR + + L +EQS L LT S+FGD    E+L FPGGIT+ PP  
Sbjct: 92  VPYPKYSSISSMYLSILRASFMSLVVEQSTLHLTESLFGDTSLFEVLKFPGGITIIPPQA 151

Query: 195 GNIC--PTALFNVTLNMTIQQLRVHLKELESELRIILQLTPYEDLIVEITNENGSTINLP 252
             +   P A FN TLN  I +++  + EL+ +++  LQL PYE+L +++TN  GST+  P
Sbjct: 152 AFLLQKPYASFNFTLNFPIYKVQGRMNELKDQMKAGLQLDPYENLYIKLTNSEGSTVRPP 211

Query: 253 VTVH 256
             V 
Sbjct: 212 TIVQ 215



>Os01g0938600 Conserved hypothetical protein
          Length = 513

 Score =  128 bits (321), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 84/240 (35%), Positives = 126/240 (52%), Gaps = 4/240 (1%)

Query: 72  DPGV-LPGEIQASFFLLKKRQQLIPHVRRLQKDIYREIGIPNTTVSVSMHTSKYKDSTYV 130
           DPG     +I ASF L K   +L  +  +L+ DIY EIGIPN+TV V+       + T V
Sbjct: 92  DPGAGFDADIVASFRLHKMVPELNGNASKLELDIYEEIGIPNSTVVVNSLQLVGSNWTNV 151

Query: 131 KFGILPNPRNSSISAQSIIALRKNLIQLTLEQSNLSLTSSVFGDPHCLEILGFPGGITVP 190
            F I+P P+N ++S+  +  LR   +   + QS L LT S+FG+    E+L FPGGIT+ 
Sbjct: 152 IFSIVPYPKNLTLSSTGLSILRSYFMSFVVRQSTLQLTESLFGNSSSFEVLKFPGGITII 211

Query: 191 PPPDGNI--CPTALFNVTLNMTIQQLRVHLKELESELRIILQLTPYEDLIVEITNENGST 248
           PP    +   P A FN TLN  I +++  + EL+ +++  L L  YE+L +++ N NGST
Sbjct: 212 PPQTAFLPQKPHATFNFTLNFPIYKVQDRIDELKDQMKTGLLLNSYENLYIKLANLNGST 271

Query: 249 INLPVTVHILIAPNYPSNYLETYRXXXXXXXXXXXXPKNLDLN-PIFGMIENLWLSPCLQ 307
           ++ P  V   I     ++     R              NL LN  +FG ++ + LS  L+
Sbjct: 272 VDPPTIVETSIFLEVGNHQPSVPRMKQLAQTITNSSSGNLGLNHTVFGRVKQISLSSYLR 331



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.135    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,565,308
Number of extensions: 531028
Number of successful extensions: 1306
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1299
Number of HSP's successfully gapped: 4
Length of query: 405
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 302
Effective length of database: 11,657,759
Effective search space: 3520643218
Effective search space used: 3520643218
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)