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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0373500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.16 (0.025) R2 : 0.00405
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0717 (0.0527) R2dN8 : 0.00523 R2N8 : 0.00405
σ : 0.471
deviance : 101.84
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
95.66 0.46 3.85 1.43 0.0861 -53 -0.253 -110 -0.0598 0.285 15.01 773 -- --
100 0.469 3.16 -0.103 0.0669 -0.651 -0.181 -- -0.0803 0.175 15.01 773 -- --
95.89 0.456 3.85 1.44 0.0913 -52.9 -- -109 -0.0586 23 15 773 -- --
98.43 0.462 3.15 -0.0265 0.117 -0.627 -- -- -0.0487 23.7 17.2 1024 -- --
96.41 0.457 3.85 1.44 -- -53 -- -110 -0.0579 -- 15 773 -- --
100.79 0.471 3.16 -0.131 0.0763 -- -0.266 -- -0.0874 0.412 -- -- -- --
101.04 0.471 3.16 -0.12 0.0832 -- -- -- -0.0854 22.9 -- -- -- --
99.21 0.464 3.15 -0.0279 -- -0.61 -- -- -0.0521 -- 17.09 1077 -- --
98.45 0.462 3.15 -- 0.115 -0.645 -- -- -0.0471 23.6 17.16 1024 -- --
101.47 0.471 3.16 -0.118 -- -- -- -- -0.0849 -- -- -- -- --
101.42 0.471 3.16 -- 0.0823 -- -- -- -0.072 22.8 -- -- -- --
99.23 0.464 3.15 -- -- -0.627 -- -- -0.0483 -- 17.07 1082 -- --
101.84 0.471 3.16 -- -- -- -- -- -0.0717 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 89.01 temperature 20.0 90 < th dose independent rect. 10 1
5 89.02 temperature 20.0 30 < th dose dependent rect. 10 2
16 89.04 humidity 90.0 90 > th dose independent rect. 10 1
18 89.04 precipitation 0.1 90 > th dose independent rect. 10 1
40 89.04 humidity 90.0 90 > th dose dependent rect. 10 1
42 89.04 precipitation 0.1 90 > th dose dependent rect. 10 1
90 93.53 wind 3.0 90 < th dose dependent rect. 22 1
93 93.64 temperature 15.0 720 < th dose dependent rect. 24 1
97 94.03 temperature 15.0 720 < th dose dependent rect. 24 19
99 94.11 temperature 15.0 720 < th dose independent rect. 24 1
100 94.16 humidity 80.0 10 > th dose independent rect. 12 1
111 94.26 humidity 80.0 90 > th dose dependent rect. 22 1
117 94.34 wind 5.0 10 < th dose dependent rect. 22 2
118 94.35 wind 3.0 10 < th dose independent rect. 22 2
119 94.35 temperature 15.0 720 < th dose dependent rect. 24 15
128 94.53 temperature 15.0 720 < th dose independent rect. 24 18
131 94.65 temperature 15.0 720 < th dose independent rect. 24 15
157 94.82 wind 3.0 90 < th dose independent rect. 22 1
158 94.82 temperature 30.0 30 < th dose independent rect. 11 13
163 94.88 temperature 15.0 720 < th dose dependent sin 4 NA
165 94.89 temperature 10.0 30 > th dose dependent rect. 24 22
170 94.93 humidity 50.0 30 > th dose dependent rect. 24 11
180 95.04 atmosphere 1000.0 30 > th dose independent rect. 24 11
182 95.05 temperature 15.0 720 < th dose independent rect. 22 5
193 95.08 atmosphere 1015.0 30 < th dose independent rect. 11 13
229 95.16 temperature 15.0 720 < th dose independent sin 9 NA
231 95.16 atmosphere 1010.0 90 < th dose independent rect. 24 22
268 95.23 wind 5.0 10 < th dose dependent rect. 20 4
289 95.26 humidity 50.0 30 > th dose dependent rect. 11 13
305 95.30 temperature 15.0 720 < th dose independent sin 4 NA
311 95.30 precipitation 0.1 30 < th dose independent rect. 11 13
314 95.30 precipitation 0.1 30 < th dose dependent rect. 11 13
316 95.31 wind 1.0 10 > th dose independent rect. 11 13
327 95.33 humidity 70.0 10 > th dose dependent rect. 12 1
330 95.34 temperature 15.0 10 > th dose independent rect. 24 11
333 95.34 radiation 40.0 10 < th dose dependent rect. 24 11
340 95.35 radiation 30.0 30 < th dose independent rect. 24 11
344 95.36 temperature 10.0 1440 > th dose independent rect. 1 11
347 95.36 atmosphere 995.0 1440 > th dose independent rect. 1 11
348 95.36 temperature 10.0 1440 > th dose independent rect. 12 13
367 95.38 humidity 50.0 30 > th dose independent rect. 24 11
370 95.38 temperature 10.0 30 > th dose independent rect. 11 13
371 95.39 wind 9.0 30 < th dose independent rect. 24 11
373 95.39 wind 1.0 30 < th dose dependent rect. 17 7
384 95.42 atmosphere 1015.0 30 < th dose independent rect. 24 11
412 95.47 precipitation 0.1 30 < th dose independent rect. 24 11
415 95.47 precipitation 0.1 30 < th dose dependent rect. 24 11
426 95.50 temperature 15.0 720 > th dose independent sin 5 NA
431 95.51 wind 9.0 30 < th dose independent rect. 11 13
433 95.52 humidity 50.0 30 > th dose independent rect. 11 13
439 95.53 temperature 30.0 30 < th dose independent rect. 24 11
460 95.57 temperature 10.0 30 > th dose dependent rect. 24 19
461 95.58 atmosphere 1005.0 30 > th dose independent rect. 19 5
463 95.58 atmosphere 995.0 30 > th dose independent rect. 11 13
488 95.62 wind 5.0 270 < th dose dependent rect. 19 4
524 95.70 radiation 30.0 10 < th dose dependent rect. 12 1
525 95.71 wind 3.0 10 < th dose independent rect. 20 4
544 95.73 radiation 40.0 1440 < th dose independent rect. 14 18
592 95.79 humidity 80.0 90 > th dose independent rect. 10 14
597 95.80 radiation 40.0 1440 < th dose independent rect. 14 7
625 95.83 wind 7.0 270 < th dose dependent rect. 18 6
642 95.85 radiation 40.0 1440 < th dose independent rect. 14 3
644 95.85 atmosphere 1010.0 270 < th dose independent rect. 9 10
762 96.04 wind 9.0 30 < th dose dependent rect. 24 11
765 96.06 humidity 80.0 90 > th dose independent rect. 22 1
767 96.06 radiation 20.0 270 < th dose independent rect. 23 10
771 96.07 atmosphere 1015.0 4320 > th dose independent rect. 15 1
773 96.07 atmosphere 1015.0 4320 > th dose dependent rect. 15 1
775 96.08 temperature 15.0 720 > th dose independent no NA NA
796 96.10 temperature 15.0 720 < th dose independent no NA NA
797 96.10 atmosphere 1015.0 90 < th dose independent rect. 22 1
803 96.10 temperature 15.0 720 < th dose independent rect. 10 21
844 96.12 radiation 40.0 1440 < th dose independent sin 13 NA
857 96.14 atmosphere 1015.0 10 < th dose independent rect. 22 2
869 96.14 wind 9.0 30 < th dose dependent rect. 11 13
870 96.15 wind 5.0 270 < th dose independent rect. 19 4
880 96.16 radiation 40.0 1440 < th dose independent rect. 13 20
901 96.18 atmosphere 995.0 30 > th dose dependent rect. 11 13
905 96.19 humidity 80.0 10 > th dose independent rect. 22 2
906 96.19 temperature 15.0 720 > th dose independent rect. 22 6
928 96.21 temperature 10.0 30 > th dose dependent rect. 24 11
929 96.22 temperature 15.0 720 > th dose independent sin 13 NA
936 96.24 temperature 15.0 720 < th dose independent rect. 4 23
945 96.26 atmosphere 1005.0 10 > th dose independent rect. 22 2
989 96.30 atmosphere 1005.0 90 > th dose independent rect. 22 1