BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0745600 Os02g0745600|AK103517
(488 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0745600 Conserved hypothetical protein 808 0.0
Os06g0227200 Conserved hypothetical protein 221 8e-58
Os11g0525700 Conserved hypothetical protein 139 5e-33
Os09g0563700 Conserved hypothetical protein 87 3e-17
Os01g0165200 STAT protein family protein 79 6e-15
>Os02g0745600 Conserved hypothetical protein
Length = 488
Score = 808 bits (2086), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 408/488 (83%), Positives = 408/488 (83%)
Query: 1 MVKTXXXXXXXXXXXXXXXXXXXXXTTPRGVRPXXXXXXXXXDPEMQKVXXXXXXXXXXX 60
MVKT TTPRGVRP DPEMQKV
Sbjct: 1 MVKTSANPNAKGKAAASSSGLPSPKTTPRGVRPKAFKKKAKADPEMQKVAAAEAAATAET 60
Query: 61 XXXPPLKPAEVSPAAAVAKENGGQRMSRKEKTKMKEGDQMXXXXXXXXXXXXXXXXXXXX 120
PPLKPAEVSPAAAVAKENGGQRMSRKEKTKMKEGDQM
Sbjct: 61 ASAPPLKPAEVSPAAAVAKENGGQRMSRKEKTKMKEGDQMKEDKKGRIKGKEKKDDKARE 120
Query: 121 XXXEAGFIFMCSAKTKPECFQNGVFGLPKGKIDVVEKIQPGAXXXXXXXXXXXXXGIYKA 180
EAGFIFMCSAKTKPECFQNGVFGLPKGKIDVVEKIQPGA GIYKA
Sbjct: 121 RKGEAGFIFMCSAKTKPECFQNGVFGLPKGKIDVVEKIQPGAKLFLYDFDLKLLYGIYKA 180
Query: 181 KTKGGLDLVRGAFHGKFPAQVKFKVDKDCLPLPESSFKHAIKENYNSKGKFTQELSLKQV 240
KTKGGLDLVRGAFHGKFPAQVKFKVDKDCLPLPESSFKHAIKENYNSKGKFTQELSLKQV
Sbjct: 181 KTKGGLDLVRGAFHGKFPAQVKFKVDKDCLPLPESSFKHAIKENYNSKGKFTQELSLKQV 240
Query: 241 HRLLELFKPISLPQSSIQYVKERHRRLDVFEGRLPHYVEGRRLPRHVEEMHHLRHVEERR 300
HRLLELFKPISLPQSSIQYVKERHRRLDVFEGRLPHYVEGRRLPRHVEEMHHLRHVEERR
Sbjct: 241 HRLLELFKPISLPQSSIQYVKERHRRLDVFEGRLPHYVEGRRLPRHVEEMHHLRHVEERR 300
Query: 301 LPYDHEERRLPYDHEERRRPRYVEDIRHPQFLKERHAITDSLHDPFRSRHVTHLPELQHA 360
LPYDHEERRLPYDHEERRRPRYVEDIRHPQFLKERHAITDSLHDPFRSRHVTHLPELQHA
Sbjct: 301 LPYDHEERRLPYDHEERRRPRYVEDIRHPQFLKERHAITDSLHDPFRSRHVTHLPELQHA 360
Query: 361 PPTYYHHVAHTFDERYHQPQVDIVYERSAPRAIVEATDREAFLARDYRVPEEIVARSDHV 420
PPTYYHHVAHTFDERYHQPQVDIVYERSAPRAIVEATDREAFLARDYRVPEEIVARSDHV
Sbjct: 361 PPTYYHHVAHTFDERYHQPQVDIVYERSAPRAIVEATDREAFLARDYRVPEEIVARSDHV 420
Query: 421 DELYRSYRLATRAMDLHQGPSYVTAAYENPGPAYSESIHQMPVSSTRPNVPGAPVSSLYS 480
DELYRSYRLATRAMDLHQGPSYVTAAYENPGPAYSESIHQMPVSSTRPNVPGAPVSSLYS
Sbjct: 421 DELYRSYRLATRAMDLHQGPSYVTAAYENPGPAYSESIHQMPVSSTRPNVPGAPVSSLYS 480
Query: 481 FAGAPAYR 488
FAGAPAYR
Sbjct: 481 FAGAPAYR 488
>Os06g0227200 Conserved hypothetical protein
Length = 704
Score = 221 bits (564), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 171/491 (34%), Positives = 222/491 (45%), Gaps = 162/491 (32%)
Query: 125 AGFIFMCSAKTKPECFQNGVFGLPKGKIDVVEKIQPGAXXXXXXXXXXXXXGIYKAKTKG 184
G IFMC+A+TKPECFQ+ +FG P+GKI +VEKI+PG G+YKA +KG
Sbjct: 249 GGLIFMCNAQTKPECFQSRLFGYPRGKIGIVEKIRPGMRLFLYDFDLKLLYGVYKAVSKG 308
Query: 185 GLDLVRGAFHGKFPAQVKFKVDKDCLPLPESSFKHAIKENYNSKGKFTQELSLKQVHRLL 244
GLDLVR AF GKFPAQVKFK+DKDCLPLPES FK AI+ENY++K KF EL+ +QVHRL+
Sbjct: 309 GLDLVRDAFSGKFPAQVKFKIDKDCLPLPESRFKDAIRENYSAKSKFNPELNSRQVHRLI 368
Query: 245 ELFKPISLPQSSIQY-VKERHRRLDVFEGRL-PHYVEGR--------------------- 281
LF+ +S+PQ + Q ++E H +EG+ PH E R
Sbjct: 369 ALFESVSVPQPAPQKPLEEMHH----YEGKTQPHQYEERRSSLPVMHVPPPKDLYRATRF 424
Query: 282 -------RLPRHVEEMHHLRHVEERRLPYDHEERRLPYDHEERRRPRYVEDIRHPQFLKE 334
R+ + H H+ ++ E +R+P D E R P +E
Sbjct: 425 DPHPVDYRIDHSLSNAHDGPHIHYQQTLVARESQRVPLDIEPRLVPHALE---------- 474
Query: 335 RHAITDSLHDPFRSRHVTHLPELQHAPPTYYHHVAHTFDERYHQPQVDIVYERSAPRAIV 394
RH +PE+QH P YY H+A + D Y++ QVD + +R A R +
Sbjct: 475 -------------PRHGPSIPEIQHVPHAYYRHLAPS-DVPYYRSQVDPLPDRVAARTVA 520
Query: 395 EATDREAFLARDYRV--------------------------------------------- 409
+ FL+RDY
Sbjct: 521 -----DPFLSRDYTAVPATRSDGAARVEELRRIGDIASLGARVEELYRPGELAARGSRVE 575
Query: 410 ----PEEIVARSDHVDELYR-------SYRL----------------------------A 430
P EIVAR V+ELYR S R+ A
Sbjct: 576 ELYRPGEIVARGSRVEELYRPREVAAHSARMEDLYRPGEIPIRGARVEDLYRPGEISARA 635
Query: 431 TRAMDLHQGPSYVTAAYENP-------------GPAYSESIHQMPVSSTRPNVPGAPVSS 477
R DL++ +T A + P PAYS+ I Q +STR N PGA VSS
Sbjct: 636 VRVEDLYRSDQRITHAVDLPLHAPYPTAHYEVPNPAYSD-ISQR-YASTRLNAPGASVSS 693
Query: 478 LYSFAGAPAYR 488
LYSF GAPAYR
Sbjct: 694 LYSFPGAPAYR 704
>Os11g0525700 Conserved hypothetical protein
Length = 644
Score = 139 bits (350), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 66/126 (52%), Positives = 83/126 (65%), Gaps = 1/126 (0%)
Query: 125 AGFIFMCSAKTKPECFQNGVFGLPKGKIDVVEKIQPGAXXXXXXXXXXXXXGIYKAKTKG 184
AG+IFMCS TKPEC+ GV G P+G++ V +I+ GA G Y+A + G
Sbjct: 46 AGYIFMCSGATKPECYARGVMGQPRGRLPAVSRIRRGAALFLYDFDSRHLHGPYRAASDG 105
Query: 185 GLDLVRGAFHGKFPAQVKFKVDKDCLPLPESSFKHAIKENYNSKGKFTQELSLKQVHRLL 244
GLDL AF G+FPAQVKF +D D +P+PESS + AIKENY S GKF+ EL+L QV L
Sbjct: 106 GLDLAPAAFGGRFPAQVKFTIDGDFMPIPESSLRSAIKENY-SNGKFSSELTLAQVENLR 164
Query: 245 ELFKPI 250
LF+PI
Sbjct: 165 TLFRPI 170
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 68/134 (50%), Positives = 89/134 (66%), Gaps = 2/134 (1%)
Query: 125 AGFIFMCSAKTKPECFQNGVFGLPKGKIDVVEKIQPGAXXXXXXXXXXXXXGIYKAKTKG 184
AG+IFMC+ TK EC+++ V GLP G +DVV +I+ G G Y A + G
Sbjct: 226 AGYIFMCNGVTKAECYRHRVMGLPLGSLDVVSRIRRGTALFLYDFDAKHLYGPYHADSNG 285
Query: 185 GLDLVRGAFHGKFPAQVKFKVDKDCLPLPESSFKHAIKENYNSKGKFTQELSLKQVHRLL 244
GL LV AF G+FPAQVKF VD D +P+PESS + AIKENY S GKF+ EL+L QV +L
Sbjct: 286 GLTLVPDAFRGRFPAQVKFTVDGDFMPIPESSLRTAIKENY-SNGKFSPELTLVQVEKLR 344
Query: 245 ELFKP-ISLPQSSI 257
LF+P I +P+S++
Sbjct: 345 ALFRPIIVMPESAL 358
>Os09g0563700 Conserved hypothetical protein
Length = 710
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 66/126 (52%), Gaps = 3/126 (2%)
Query: 125 AGFIFMCSAKTKPECFQNGVFGLPKGKIDVVEKIQPGAXXXXXXXXXXXXXGIYKAKTKG 184
AG IFM + T+ CF++ +FGLP V I+ G G+++A + G
Sbjct: 17 AGAIFMSNTATRELCFRSNIFGLPIEYQPFVRNIRQGMPLFLFDHTERKLYGVFEATSDG 76
Query: 185 GLDLVRGAFHG---KFPAQVKFKVDKDCLPLPESSFKHAIKENYNSKGKFTQELSLKQVH 241
G +++R AF +PAQV FK+ C PL E F AIKENY KF +LS +QV
Sbjct: 77 GFNIIRSAFSSIGCSYPAQVCFKIIWKCRPLTEDEFSPAIKENYYMPWKFYFDLSYQQVV 136
Query: 242 RLLELF 247
L +LF
Sbjct: 137 CLYQLF 142
>Os01g0165200 STAT protein family protein
Length = 700
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 66/140 (47%), Gaps = 15/140 (10%)
Query: 125 AGFIFMCSAKTKPECFQNGVFGLPKGKIDVVEKIQPGAXXXXXXXXXXXXXGIYKAKTKG 184
G +F C+ T ECF +FGLP+ I V+ ++PG GI+KA + G
Sbjct: 22 GGVVFCCNNNTFDECFTKQLFGLPQRNILYVKNVKPGLPLFLFNYSNRQLHGIFKATSTG 81
Query: 185 GLDLVRGAFHGK-------------FPAQVKFKVDKDCLPLPESSFKHAIKENY--NSKG 229
L++ R A+ + FPAQV+F +C PLPES +K I NY +
Sbjct: 82 QLNIDRFAWMSEQSNDAKTNAKTTPFPAQVRFSTRTECPPLPESKYKSVIINNYRKDKPS 141
Query: 230 KFTQELSLKQVHRLLELFKP 249
F EL +Q L+ LF P
Sbjct: 142 HFRFELDHRQTRDLISLFLP 161
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.135 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,533,600
Number of extensions: 669538
Number of successful extensions: 1901
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 1885
Number of HSP's successfully gapped: 7
Length of query: 488
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 383
Effective length of database: 11,553,331
Effective search space: 4424925773
Effective search space used: 4424925773
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)