BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0736200 Os02g0736200|AK101440
(476 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0736200 Similar to RNA-directed RNA polymerase (EC 2.7... 997 0.0
Os01g0527600 RNA dependent RNA polymerase family protein 127 2e-29
Os04g0465700 RNA dependent RNA polymerase family protein 119 5e-27
Os01g0198000 RNA dependent RNA polymerase family protein 72 1e-12
>Os02g0736200 Similar to RNA-directed RNA polymerase (EC 2.7.7.48)
Length = 476
Score = 997 bits (2578), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 476/476 (100%), Positives = 476/476 (100%)
Query: 1 IQQVGYLNNTQNSGDHATSNHHLTYLWMMDWFMSTVYFYGPEINVSNRVVRNFSSDIENF 60
IQQVGYLNNTQNSGDHATSNHHLTYLWMMDWFMSTVYFYGPEINVSNRVVRNFSSDIENF
Sbjct: 1 IQQVGYLNNTQNSGDHATSNHHLTYLWMMDWFMSTVYFYGPEINVSNRVVRNFSSDIENF 60
Query: 61 LRISFVDEDCEKLRATDLSPRSASGHDANRTALYKRVLSVLSDGITIGGKNFEFLAFSSS 120
LRISFVDEDCEKLRATDLSPRSASGHDANRTALYKRVLSVLSDGITIGGKNFEFLAFSSS
Sbjct: 61 LRISFVDEDCEKLRATDLSPRSASGHDANRTALYKRVLSVLSDGITIGGKNFEFLAFSSS 120
Query: 121 QLRDNSAWMFASRQGLAASDIRTWMGDFRNIRNVAKYAARLGQSFSSSTETLKVQKYEVE 180
QLRDNSAWMFASRQGLAASDIRTWMGDFRNIRNVAKYAARLGQSFSSSTETLKVQKYEVE
Sbjct: 121 QLRDNSAWMFASRQGLAASDIRTWMGDFRNIRNVAKYAARLGQSFSSSTETLKVQKYEVE 180
Query: 181 EISDIKNGTQHVFSDGIGKISSAFANEVAMKCNLKRFAPSAFQIRYGGYKGVVAVDPTSR 240
EISDIKNGTQHVFSDGIGKISSAFANEVAMKCNLKRFAPSAFQIRYGGYKGVVAVDPTSR
Sbjct: 181 EISDIKNGTQHVFSDGIGKISSAFANEVAMKCNLKRFAPSAFQIRYGGYKGVVAVDPTSR 240
Query: 241 WKLSLRKSMLKFQSDNITVDVLAYSKYQPGFLNRQLITLLSTLGVRDSVFEQKQEEAVNQ 300
WKLSLRKSMLKFQSDNITVDVLAYSKYQPGFLNRQLITLLSTLGVRDSVFEQKQEEAVNQ
Sbjct: 241 WKLSLRKSMLKFQSDNITVDVLAYSKYQPGFLNRQLITLLSTLGVRDSVFEQKQEEAVNQ 300
Query: 301 LNKMVTDPQAAIEAIELMPMGEITNAVKELLLCGYQPDDEPYLSMLLQTFRASKLLELKT 360
LNKMVTDPQAAIEAIELMPMGEITNAVKELLLCGYQPDDEPYLSMLLQTFRASKLLELKT
Sbjct: 301 LNKMVTDPQAAIEAIELMPMGEITNAVKELLLCGYQPDDEPYLSMLLQTFRASKLLELKT 360
Query: 361 KSRILIPKGRAMMGCLDETRTLKYGQVFIRATSGVNDNDRFTVTGKVVIAKNPCLHPGDI 420
KSRILIPKGRAMMGCLDETRTLKYGQVFIRATSGVNDNDRFTVTGKVVIAKNPCLHPGDI
Sbjct: 361 KSRILIPKGRAMMGCLDETRTLKYGQVFIRATSGVNDNDRFTVTGKVVIAKNPCLHPGDI 420
Query: 421 RILHAVDVPVLHHMFNCVVFPQQGPRPHPNECSGSDLDGDIYFVSWDPSLIPPRMV 476
RILHAVDVPVLHHMFNCVVFPQQGPRPHPNECSGSDLDGDIYFVSWDPSLIPPRMV
Sbjct: 421 RILHAVDVPVLHHMFNCVVFPQQGPRPHPNECSGSDLDGDIYFVSWDPSLIPPRMV 476
>Os01g0527600 RNA dependent RNA polymerase family protein
Length = 385
Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 53/71 (74%), Positives = 61/71 (85%)
Query: 403 VTGKVVIAKNPCLHPGDIRILHAVDVPVLHHMFNCVVFPQQGPRPHPNECSGSDLDGDIY 462
+ G VVIAKNPCLHPGD+RIL AVDVP LHH+ +C+VFPQ+G RPH NE SGSDLDGD+Y
Sbjct: 1 ILGTVVIAKNPCLHPGDVRILEAVDVPELHHLVDCLVFPQKGERPHANEASGSDLDGDLY 60
Query: 463 FVSWDPSLIPP 473
FV+WD LIPP
Sbjct: 61 FVTWDEKLIPP 71
>Os04g0465700 RNA dependent RNA polymerase family protein
Length = 377
Score = 119 bits (298), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 50/80 (62%), Positives = 61/80 (76%)
Query: 396 NDNDRFTVTGKVVIAKNPCLHPGDIRILHAVDVPVLHHMFNCVVFPQQGPRPHPNECSGS 455
+D TV GKV I KNPCLHPGDIR+L A+ P L M +C+VFPQ+G RPHPNECSG
Sbjct: 5 DDGKTATVVGKVAITKNPCLHPGDIRVLEAIYDPDLVGMVDCLVFPQRGERPHPNECSGG 64
Query: 456 DLDGDIYFVSWDPSLIPPRM 475
DLDGD+YF++WD LIP ++
Sbjct: 65 DLDGDLYFITWDDKLIPEKV 84
>Os01g0198000 RNA dependent RNA polymerase family protein
Length = 582
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 84/289 (29%), Positives = 125/289 (43%), Gaps = 36/289 (12%)
Query: 204 FANEVAMKCNL---KRFAPSAFQIR-----------YGGYKGVVAVDPTSRWKLSLRKSM 249
F N A+K + KR P IR G + V ++D S + +KS+
Sbjct: 18 FYNGSAVKGTVLVDKRLPPRTIHIRPSMLKIKTYPELSGVQSVNSLDIVS--ARNAKKSL 75
Query: 250 LKFQSDNITVDVLAYSKYQPGFLNRQLITLLSTLGVRDSVFEQKQEEAVNQLNKMVTDPQ 309
QS N V ++ F + LI LL GV + F + + A+ + + D
Sbjct: 76 SGVQSVNSFEIVSTSNRSGRTFTSNNLIALLHYGGVPEEFFMELLQTAIEEADNARFDYA 135
Query: 310 AAIE-AIELMPMGEITNAVKELLLCGYQPDDEPYLSMLLQTFRASKLLELK--TKSRILI 366
A+ A M + A ++L G P +E YL L LLE K +I I
Sbjct: 136 GALNIAFNYADMEDSMPA--RMILSGI-PLEESYLQSRLDFL---SLLERKGIKNGKIPI 189
Query: 367 PKGRAMMGCLDETRTLKYGQVFIRATSGVNDNDRFTVTGKVVIAKNPCLHPGDIRILHAV 426
+MG D T L +V + G V+G V++ K P LHPGDI +L A
Sbjct: 190 DDCYYLMGTADPTGKLGPNEVCVILDYG-------QVSGDVLVYKYPGLHPGDIHVLKAT 242
Query: 427 ---DV-PVLHHMFNCVVFPQQGPRPHPNECSGSDLDGDIYFVSWDPSLI 471
D+ V+ + + ++FP G R +E + SD DGDIY+VS +P L+
Sbjct: 243 YSSDIEKVVGNSKHAILFPTTGQRSLADEMANSDFDGDIYWVSLNPKLL 291
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.135 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,616,895
Number of extensions: 622292
Number of successful extensions: 1274
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1275
Number of HSP's successfully gapped: 4
Length of query: 476
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 371
Effective length of database: 11,553,331
Effective search space: 4286285801
Effective search space used: 4286285801
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 158 (65.5 bits)