Os01g0198000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RNA dependent RNA polymerase family protein.
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Os01g0198000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : RNA dependent RNA polymerase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 98.33 | 0.466 | 8.15 | 2.83 | 0.796 | -0.942 | -0.162 | 1.64 | 0.764 | 4.19 | 19.3 | 1453 | -- | -- |
| 101.63 | 0.47 | 8.19 | 2.63 | 0.811 | -1.27 | -0.115 | -- | 0.727 | 4.12 | 19.38 | 1380 | -- | -- |
| 98.4 | 0.462 | 8.15 | 2.83 | 0.796 | -0.942 | -- | 1.62 | 0.764 | 4.22 | 19.32 | 1453 | -- | -- |
| 101.68 | 0.47 | 8.19 | 2.63 | 0.809 | -1.27 | -- | -- | 0.729 | 4.14 | 19.39 | 1380 | -- | -- |
| 130.76 | 0.533 | 8.13 | 2.88 | -- | -0.938 | -- | 1.86 | 0.799 | -- | 19.2 | 1746 | -- | -- |
| 125.84 | 0.526 | 8.23 | 2.17 | 0.772 | -- | 0.011 | -- | 0.515 | 4.23 | -- | -- | -- | -- |
| 125.84 | 0.525 | 8.23 | 2.17 | 0.772 | -- | -- | -- | 0.515 | 4.23 | -- | -- | -- | -- |
| 135.05 | 0.541 | 8.19 | 2.67 | -- | -1.31 | -- | -- | 0.744 | -- | 19.19 | 1661 | -- | -- |
| 248.94 | 0.735 | 8.28 | -- | 0.77 | 0.527 | -- | -- | 0.293 | 4.18 | 15 | 912 | -- | -- |
| 158.08 | 0.587 | 8.24 | 2.2 | -- | -- | -- | -- | 0.536 | -- | -- | -- | -- | -- |
| 250.05 | 0.74 | 8.29 | -- | 0.814 | -- | -- | -- | 0.273 | 4.18 | -- | -- | -- | -- |
| 175.51 | 0.617 | 8.41 | -- | -- | 1.54 | -- | -- | -0.246 | -- | 22.05 | 47520 | -- | -- |
| 285.96 | 0.789 | 8.29 | -- | -- | -- | -- | -- | 0.291 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 93.40 | humidity | 90 | 14400 | > th | dose independent | rect. | 22 | 11 |
| 9 | 93.87 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 13 | 94.09 | humidity | 90 | 14400 | > th | dose independent | sin | 10 | NA |
| 18 | 94.19 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 13 |
| 20 | 94.23 | humidity | 90 | 14400 | < th | dose independent | rect. | 22 | 11 |
| 21 | 94.24 | humidity | 90 | 14400 | < th | dose independent | rect. | 24 | 9 |
| 34 | 94.47 | humidity | 90 | 14400 | > th | dose independent | rect. | 22 | 3 |
| 46 | 94.71 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 10 |
| 59 | 94.94 | humidity | 90 | 14400 | < th | dose independent | sin | 10 | NA |
| 60 | 94.94 | humidity | 90 | 14400 | < th | dose independent | rect. | 18 | 13 |
| 103 | 95.36 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 4 |
| 119 | 95.54 | humidity | 90 | 14400 | < th | dose independent | rect. | 18 | 10 |
| 122 | 95.59 | humidity | 90 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 130 | 95.63 | humidity | 90 | 14400 | < th | dose independent | rect. | 19 | 8 |
| 133 | 95.65 | humidity | 80 | 14400 | > th | dose dependent | rect. | 23 | 9 |
| 150 | 95.80 | humidity | 90 | 14400 | < th | dose independent | rect. | 22 | 1 |
| 151 | 95.80 | humidity | 90 | 14400 | < th | dose independent | rect. | 22 | 3 |
| 163 | 95.89 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 192 | 96.11 | humidity | 90 | 14400 | > th | dose independent | rect. | 3 | 5 |
| 267 | 96.81 | wind | 1 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 280 | 96.87 | humidity | 80 | 14400 | > th | dose dependent | rect. | 23 | 2 |
| 307 | 97.05 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 18 |
| 310 | 97.07 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 364 | 97.36 | wind | 1 | 43200 | < th | dose dependent | rect. | 2 | 1 |
| 371 | 97.43 | humidity | 90 | 14400 | > th | dose dependent | sin | 5 | NA |
| 378 | 97.47 | humidity | 90 | 14400 | > th | dose dependent | rect. | 13 | 18 |
| 400 | 97.57 | humidity | 90 | 14400 | < th | dose independent | rect. | 5 | 2 |
| 402 | 97.58 | humidity | 80 | 14400 | > th | dose dependent | rect. | 21 | 6 |
| 406 | 97.60 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 4 |
| 442 | 97.71 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 2 |
| 464 | 97.78 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 4 |
| 494 | 97.93 | radiation | 10 | 4320 | < th | dose dependent | rect. | 3 | 2 |
| 507 | 97.98 | wind | 9 | 4320 | < th | dose independent | rect. | 17 | 4 |
| 515 | 98.00 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 2 |
| 517 | 98.00 | humidity | 80 | 14400 | > th | dose dependent | sin | 9 | NA |
| 549 | 98.07 | temperature | 20 | 1440 | < th | dose dependent | rect. | 2 | 3 |
| 562 | 98.11 | temperature | 20 | 720 | > th | dose independent | rect. | 20 | 16 |
| 563 | 98.12 | wind | 9 | 4320 | > th | dose independent | rect. | 17 | 4 |
| 570 | 98.13 | temperature | 20 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 586 | 98.17 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 590 | 98.17 | humidity | 50 | 14400 | > th | dose dependent | rect. | 23 | 8 |
| 627 | 98.27 | temperature | 20 | 720 | > th | dose independent | rect. | 16 | 19 |
| 654 | 98.35 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 21 |
| 704 | 98.48 | humidity | 50 | 14400 | > th | dose dependent | rect. | 24 | 1 |
| 718 | 98.51 | humidity | 90 | 14400 | > th | dose independent | no | NA | NA |
| 781 | 98.69 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 784 | 98.70 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 16 |
| 810 | 98.76 | humidity | 50 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 819 | 98.78 | wind | 7 | 4320 | > th | dose dependent | rect. | 17 | 4 |
| 834 | 98.82 | humidity | 50 | 14400 | > th | dose dependent | rect. | 23 | 3 |
| 862 | 98.88 | humidity | 90 | 14400 | > th | dose independent | rect. | 5 | 23 |
| 865 | 98.89 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 914 | 98.98 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 920 | 98.98 | humidity | 50 | 14400 | > th | dose dependent | rect. | 22 | 5 |
| 939 | 99.02 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 23 |