BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0198000 Os01g0198000|AK064209
(582 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0198000 RNA dependent RNA polymerase family protein 1153 0.0
Os01g0197900 RNA dependent RNA polymerase family protein 545 e-155
Os01g0527600 RNA dependent RNA polymerase family protein 79 8e-15
Os02g0736200 Similar to RNA-directed RNA polymerase (EC 2.7... 72 1e-12
>Os01g0198000 RNA dependent RNA polymerase family protein
Length = 582
Score = 1153 bits (2982), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 558/582 (95%), Positives = 558/582 (95%)
Query: 1 MGSNNTTEYPLLIQLRLFYNGSAVKGTVLVDKRLPPRTIHIRPSMLKIKTYPELSGVQSV 60
MGSNNTTEYPLLIQLRLFYNGSAVKGTVLVDKRLPPRTIHIRPSMLKIKTYPELSGVQSV
Sbjct: 1 MGSNNTTEYPLLIQLRLFYNGSAVKGTVLVDKRLPPRTIHIRPSMLKIKTYPELSGVQSV 60
Query: 61 NSLDIVSARNAKKSLSGVQSVNSFEIVSTSNRSGRTFTSNNLIALLHYGGVPEEFFMELL 120
NSLDIVSARNAKKSLSGVQSVNSFEIVSTSNRSGRTFTSNNLIALLHYGGVPEEFFMELL
Sbjct: 61 NSLDIVSARNAKKSLSGVQSVNSFEIVSTSNRSGRTFTSNNLIALLHYGGVPEEFFMELL 120
Query: 121 QTAIEEADNARFDYAGALNIAFNYADMEDSMPARMILSGIPLEESYLQSRLDFLSLLERK 180
QTAIEEADNARFDYAGALNIAFNYADMEDSMPARMILSGIPLEESYLQSRLDFLSLLERK
Sbjct: 121 QTAIEEADNARFDYAGALNIAFNYADMEDSMPARMILSGIPLEESYLQSRLDFLSLLERK 180
Query: 181 GIKNGKIPIDDCYYLMGTADPTGKLGPNEVCVILDYGQVSGDVLVYKYPGLHPGDIHVLK 240
GIKNGKIPIDDCYYLMGTADPTGKLGPNEVCVILDYGQVSGDVLVYKYPGLHPGDIHVLK
Sbjct: 181 GIKNGKIPIDDCYYLMGTADPTGKLGPNEVCVILDYGQVSGDVLVYKYPGLHPGDIHVLK 240
Query: 241 ATYSSDIEKVVGNSKHAILFPTTGQRSLADEMANSDFDGDIYWVSLNPKLLEHFKPSKPW 300
ATYSSDIEKVVGNSKHAILFPTTGQRSLADEMANSDFDGDIYWVSLNPKLLEHFKPSKPW
Sbjct: 241 ATYSSDIEKVVGNSKHAILFPTTGQRSLADEMANSDFDGDIYWVSLNPKLLEHFKPSKPW 300
Query: 301 VPAITPNGTKQKGPEDFNESELERVLFHEFLKTRFAPSYARATAATNWLVYMDRLLTVSL 360
VPAITPNGTKQKGPEDFNESELERVLFHEFLKTRFAPSYARATAATNWLVYMDRLLTVSL
Sbjct: 301 VPAITPNGTKQKGPEDFNESELERVLFHEFLKTRFAPSYARATAATNWLVYMDRLLTVSL 360
Query: 361 DXXXXXXXXXXXXXXVDLYYLALDAPKMGNKVNIPRDLMVKQYPHFMDRSPSYHSSSILG 420
D VDLYYLALDAPKMGNKVNIPRDLMVKQYPHFMDRSPSYHSSSILG
Sbjct: 361 DESEKKLIEKKMLKLVDLYYLALDAPKMGNKVNIPRDLMVKQYPHFMDRSPSYHSSSILG 420
Query: 421 KIYDKAGDPKPLRSDNVQPTSISSLPCFAERDVPPAIKQLWQHRYNEYLADSSLLYXXXX 480
KIYDKAGDPKPLRSDNVQPTSISSLPCFAERDVPPAIKQLWQHRYNEYLADSSLLY
Sbjct: 421 KIYDKAGDPKPLRSDNVQPTSISSLPCFAERDVPPAIKQLWQHRYNEYLADSSLLYAEEA 480
Query: 481 XXXXXXIKFQELYEKYKHLLYGASEFEETPRDLDDVFSEACAIYQIAYEKARSANNVARC 540
IKFQELYEKYKHLLYGASEFEETPRDLDDVFSEACAIYQIAYEKARSANNVARC
Sbjct: 481 DEEEKKIKFQELYEKYKHLLYGASEFEETPRDLDDVFSEACAIYQIAYEKARSANNVARC 540
Query: 541 GFAWKVAGRALCHFYTVKNEGNAVVCSLQLLRNFRFTKKYRK 582
GFAWKVAGRALCHFYTVKNEGNAVVCSLQLLRNFRFTKKYRK
Sbjct: 541 GFAWKVAGRALCHFYTVKNEGNAVVCSLQLLRNFRFTKKYRK 582
>Os01g0197900 RNA dependent RNA polymerase family protein
Length = 387
Score = 545 bits (1403), Expect = e-155, Method: Compositional matrix adjust.
Identities = 273/388 (70%), Positives = 303/388 (78%), Gaps = 2/388 (0%)
Query: 196 MGTADPTGKLGPNEVCVILDYGQVSGDVLVYKYPGLHPGDIHVLKATYSSDIEK-VVGNS 254
M T DPTG L PNEVCVIL+ GQ SGDVLVYK+PGLH GDIHVLKATY D+EK VG +
Sbjct: 1 MDTTDPTGTLRPNEVCVILENGQFSGDVLVYKHPGLHFGDIHVLKATYIRDLEKEYVGYA 60
Query: 255 KHAILFPTTGQRSLADEMANSDFDGDIYWVSLNPKLLEHFKPSKPWVPAITPNGTKQKGP 314
K+AILFP +G RSLADEMANSDFDGDIYWVS NPKLLEHFKPS+PWV AI P TKQK P
Sbjct: 61 KYAILFPISGPRSLADEMANSDFDGDIYWVSKNPKLLEHFKPSEPWVQAIKPKKTKQKKP 120
Query: 315 EDFNESELERVLFHEFLKTRFAPSYARATAATNWLVYMDRLLTVSLDXXXXXXXXXXXXX 374
+D NES+LER+LFHEFLKTRF PS+A TAA +WL YMDRLLT SLD
Sbjct: 121 QDCNESKLERLLFHEFLKTRFTPSFALGTAADSWLAYMDRLLTDSLDEIEKKLIEEKMLK 180
Query: 375 XVDLYYLALDAPKMGNKVNIPRDLMVKQYPHFMDRSPSYHSSSILGKIYDKAGDPKPLRS 434
VDLYYLALDAPK GNKVNIP DLMVKQYPHFM RS SYHSSSILG+IYDKA D + LRS
Sbjct: 181 LVDLYYLALDAPKTGNKVNIPSDLMVKQYPHFMGRSFSYHSSSILGQIYDKAEDVESLRS 240
Query: 435 DNVQPTSISSLPCFAERDVPPAIKQLWQHRYNEYLADSSLLYXXXXXXXXXXIKFQELYE 494
NVQP +S LPCF ER+ PPA + LWQHRY EYL DS++LY +KFQELYE
Sbjct: 241 CNVQPIGVSLLPCFMEREAPPAARHLWQHRYEEYLTDSTMLYRAMVDKEERNMKFQELYE 300
Query: 495 KYKHLLYGASEFEETPRDLDDVFSEACAIYQIAYEKARSANNVARCGFAWKVAGRALCHF 554
KYKH+LY ASEFE+T RD DDVFSEAC IYQI YEKAR +N+ +RCGFAWKVAGRALCHF
Sbjct: 301 KYKHMLYDASEFEQTQRDPDDVFSEACVIYQIVYEKARWSNDASRCGFAWKVAGRALCHF 360
Query: 555 YTVKNEGNAVVCSLQLLRNFRFTKKYRK 582
Y +KNEG+ +CSL LLR K +R+
Sbjct: 361 YALKNEGDTALCSLPLLRKI-IKKDHRR 387
>Os01g0527600 RNA dependent RNA polymerase family protein
Length = 385
Score = 79.3 bits (194), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 93/215 (43%), Gaps = 38/215 (17%)
Query: 219 VSGDVLVYKYPGLHPGDIHVLKATYSSDIEKVVGNSKHAILFPTTGQRSLADEMANSDFD 278
+ G V++ K P LHPGD+ +L+A ++ +V ++FP G+R A+E + SD D
Sbjct: 1 ILGTVVIAKNPCLHPGDVRILEAVDVPELHHLVD----CLVFPQKGERPHANEASGSDLD 56
Query: 279 GDIYWVSLNPKLLEHFKPSKPWVPAITPNGTKQKGPEDFNESELERV--------LFHEF 330
GD+Y+V+ + KL+ P G K P D++ E +++ + F
Sbjct: 57 GDLYFVTWDEKLI--------------PPGKKSWNPMDYSPPEAKQLPRQVSQHDIIDFF 102
Query: 331 LKTRFAPSYARATAATNWLVYMDRLLTVSLDXXXXXXXXXXXXXXVDLYYLALDAPKMGN 390
LK + + R A V D +L A+D PK G
Sbjct: 103 LKNMISENLGRICNAH----------VVHADLSEYGAMDEKCIHLAELAATAVDFPKTGK 152
Query: 391 KVNIPRDLMVKQYPHFMDR--SPSYHSSSILGKIY 423
+P L K YP FM + SY S ILG++Y
Sbjct: 153 LAIMPPHLKPKVYPDFMGKEDGQSYKSEKILGRLY 187
>Os02g0736200 Similar to RNA-directed RNA polymerase (EC 2.7.7.48)
Length = 476
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 84/289 (29%), Positives = 125/289 (43%), Gaps = 36/289 (12%)
Query: 18 FYNGSAVKGTVLVDKRLPPRTIHIRPSMLKIKTYPELSGVQSVNSLDIVS--ARNAKKSL 75
F N A+K + KR P IR G + V ++D S + +KS+
Sbjct: 204 FANEVAMKCNL---KRFAPSAFQIR-----------YGGYKGVVAVDPTSRWKLSLRKSM 249
Query: 76 SGVQSVNSFEIVSTSNRSGRTFTSNNLIALLHYGGVPEEFFMELLQTAIEEADNARFDYA 135
QS N V ++ F + LI LL GV + F + + A+ + + D
Sbjct: 250 LKFQSDNITVDVLAYSKYQPGFLNRQLITLLSTLGVRDSVFEQKQEEAVNQLNKMVTDPQ 309
Query: 136 GALNIAFNYADMEDSMPA--RMILSGI-PLEESYLQSRLDFL---SLLERKGIKNGKIPI 189
A+ A M + A ++L G P +E YL L LLE K +I I
Sbjct: 310 AAIE-AIELMPMGEITNAVKELLLCGYQPDDEPYLSMLLQTFRASKLLELK--TKSRILI 366
Query: 190 DDCYYLMGTADPTGKLGPNEVCVILDYG-------QVSGDVLVYKYPGLHPGDIHVLKAT 242
+MG D T L +V + G V+G V++ K P LHPGDI +L A
Sbjct: 367 PKGRAMMGCLDETRTLKYGQVFIRATSGVNDNDRFTVTGKVVIAKNPCLHPGDIRILHAV 426
Query: 243 YSSDIEKVVGNSKHAILFPTTGQRSLADEMANSDFDGDIYWVSLNPKLL 291
D+ V+ + + ++FP G R +E + SD DGDIY+VS +P L+
Sbjct: 427 ---DV-PVLHHMFNCVVFPQQGPRPHPNECSGSDLDGDIYFVSWDPSLI 471
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.136 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 19,024,821
Number of extensions: 787983
Number of successful extensions: 1440
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1437
Number of HSP's successfully gapped: 4
Length of query: 582
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 476
Effective length of database: 11,501,117
Effective search space: 5474531692
Effective search space used: 5474531692
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 159 (65.9 bits)