Os01g0197900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RNA dependent RNA polymerase family protein.
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Os01g0197900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : RNA dependent RNA polymerase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 143.25 | 0.562 | 6.87 | 1.78 | 0.33 | -2.22 | -1.06 | 0.303 | 0.642 | 6.72 | 11.1 | 250 | -- | -- |
| 143.3 | 0.558 | 6.87 | 1.74 | 0.343 | -2.21 | -1.11 | -- | 0.628 | 6.76 | 11.98 | 234 | -- | -- |
| 145.56 | 0.562 | 6.86 | 1.85 | 0.362 | -2.15 | -- | 0.991 | 0.662 | 6.01 | 12.44 | 253 | -- | -- |
| 146.19 | 0.563 | 6.87 | 1.7 | 0.354 | -2.11 | -- | -- | 0.618 | 5.92 | 10.24 | 256 | -- | -- |
| 149.72 | 0.57 | 6.84 | 1.97 | -- | -2.25 | -- | 1.2 | 0.736 | -- | 16.69 | 308 | -- | -- |
| 192.62 | 0.651 | 6.93 | 1.24 | 0.952 | -- | -0.369 | -- | 0.317 | 5.14 | -- | -- | -- | -- |
| 192.95 | 0.65 | 6.93 | 1.24 | 0.949 | -- | -- | -- | 0.319 | 5.08 | -- | -- | -- | -- |
| 150.72 | 0.572 | 6.87 | 1.77 | -- | -2.31 | -- | -- | 0.671 | -- | 15.66 | 283 | -- | -- |
| 214.23 | 0.682 | 6.94 | -- | 0.606 | -1.29 | -- | -- | 0.333 | 5.19 | 2.165 | 275 | -- | -- |
| 240.21 | 0.724 | 6.94 | 1.28 | -- | -- | -- | -- | 0.343 | -- | -- | -- | -- | -- |
| 233.78 | 0.715 | 6.96 | -- | 0.971 | -- | -- | -- | 0.18 | 5.03 | -- | -- | -- | -- |
| 225.12 | 0.699 | 6.93 | -- | -- | -1.51 | -- | -- | 0.408 | -- | 19.6 | 282 | -- | -- |
| 283.34 | 0.786 | 6.98 | -- | -- | -- | -- | -- | 0.201 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 140.41 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 20 |
| 2 | 140.66 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 22 |
| 24 | 142.64 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 23 |
| 29 | 143.40 | temperature | 10 | 270 | > th | dose dependent | no | NA | NA |
| 31 | 143.42 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 33 | 143.50 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 23 |
| 40 | 143.98 | temperature | 15 | 270 | > th | dose dependent | rect. | 18 | 23 |
| 50 | 144.45 | temperature | 15 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 54 | 144.91 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 62 | 145.09 | temperature | 15 | 720 | > th | dose dependent | rect. | 15 | 18 |
| 66 | 145.20 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 73 | 145.35 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 93 | 145.65 | temperature | 15 | 720 | > th | dose dependent | rect. | 13 | 22 |
| 97 | 145.68 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 103 | 145.75 | temperature | 15 | 270 | > th | dose dependent | rect. | 4 | 23 |
| 113 | 145.92 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 125 | 146.00 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 21 |
| 173 | 146.30 | temperature | 30 | 1440 | < th | dose dependent | rect. | 7 | 1 |
| 183 | 146.40 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 18 |
| 185 | 146.40 | temperature | 15 | 1440 | > th | dose dependent | rect. | 18 | 20 |
| 188 | 146.41 | temperature | 30 | 720 | < th | dose dependent | sin | 13 | NA |
| 192 | 146.42 | temperature | 15 | 1440 | > th | dose dependent | rect. | 7 | 1 |
| 211 | 146.49 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 216 | 146.53 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 11 |
| 280 | 146.69 | temperature | 15 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 359 | 146.96 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 7 |
| 366 | 146.97 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 388 | 147.03 | temperature | 15 | 1440 | > th | dose dependent | rect. | 18 | 7 |
| 389 | 147.03 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 9 |
| 395 | 147.05 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 409 | 147.08 | temperature | 30 | 1440 | < th | dose dependent | rect. | 6 | 3 |
| 427 | 147.13 | temperature | 10 | 1440 | > th | dose dependent | sin | 7 | NA |
| 449 | 147.16 | temperature | 15 | 720 | > th | dose dependent | sin | 13 | NA |
| 483 | 147.22 | temperature | 15 | 1440 | > th | dose dependent | rect. | 6 | 3 |
| 513 | 147.26 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 556 | 147.33 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 3 |
| 566 | 147.34 | temperature | 10 | 1440 | > th | dose dependent | no | NA | NA |
| 622 | 147.40 | temperature | 10 | 1440 | > th | dose dependent | rect. | 23 | 23 |
| 653 | 147.43 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 700 | 147.47 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 23 |
| 740 | 147.53 | wind | 7 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 794 | 147.59 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 19 |
| 870 | 147.68 | temperature | 30 | 1440 | < th | dose dependent | sin | 10 | NA |
| 921 | 147.74 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 13 |
| 945 | 147.78 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 946 | 147.78 | temperature | 10 | 1440 | > th | dose dependent | rect. | 4 | 6 |
| 988 | 147.83 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 1 |