Os01g0527600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RNA dependent RNA polymerase family protein.
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Os01g0527600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : RNA dependent RNA polymerase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 60.6 | 0.366 | 9.8 | 2.4 | 1.61 | -0.43 | 0.223 | 1.93 | 0.737 | 18.4 | 9.966 | 1316 | -- | -- |
| 63.51 | 0.371 | 9.84 | 2.08 | 1.6 | -0.429 | 0.164 | -- | 0.686 | 18.4 | 9.983 | 8574 | -- | -- |
| 60.72 | 0.363 | 9.8 | 2.39 | 1.61 | -0.431 | -- | 1.92 | 0.738 | 18.4 | 9.985 | 1311 | -- | -- |
| 63.54 | 0.371 | 9.85 | 2.08 | 1.62 | -0.425 | -- | -- | 0.681 | 18.4 | 11.06 | 9291 | -- | -- |
| 194.08 | 0.652 | 9.82 | 2.01 | -- | 0.523 | -- | 2.24 | 0.528 | -- | 9.985 | 1311 | -- | -- |
| 66.52 | 0.382 | 9.88 | 1.85 | 1.62 | -- | 0.134 | -- | 0.552 | 18.3 | -- | -- | -- | -- |
| 66.57 | 0.382 | 9.87 | 1.85 | 1.62 | -- | -- | -- | 0.553 | 18.3 | -- | -- | -- | -- |
| 198.29 | 0.656 | 9.82 | 2.07 | -- | -0.526 | -- | -- | 0.646 | -- | -8.625 | 8536 | -- | -- |
| 97.45 | 0.46 | 10 | -- | 1.62 | 1.23 | -- | -- | -0.0246 | 18.3 | 2.791 | 47520 | -- | -- |
| 202.96 | 0.666 | 9.84 | 1.8 | -- | -- | -- | -- | 0.518 | -- | -- | -- | -- | -- |
| 156.51 | 0.585 | 9.92 | -- | 1.6 | -- | -- | -- | 0.347 | 18.4 | -- | -- | -- | -- |
| 222.29 | 0.694 | 9.85 | -- | -- | 1.44 | -- | -- | 0.392 | -- | 24.3 | 335 | -- | -- |
| 288.85 | 0.793 | 9.89 | -- | -- | -- | -- | -- | 0.318 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 53.95 | radiation | 1.0 | 30 | < th | dose independent | rect. | 23 | 18 |
| 3 | 53.97 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 23 | 18 |
| 5 | 54.00 | temperature | 20.0 | 30 | > th | dose independent | rect. | 5 | 18 |
| 11 | 54.50 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 23 | 15 |
| 13 | 54.56 | radiation | 1.0 | 30 | < th | dose independent | rect. | 23 | 15 |
| 28 | 54.86 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 23 | 13 |
| 31 | 54.89 | radiation | 1.0 | 10 | < th | dose independent | rect. | 23 | 13 |
| 35 | 54.92 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 23 | 9 |
| 40 | 54.97 | radiation | 1.0 | 30 | < th | dose independent | rect. | 23 | 9 |
| 44 | 54.98 | temperature | 15.0 | 270 | > th | dose independent | rect. | 1 | 22 |
| 58 | 55.16 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 23 | 7 |
| 61 | 55.23 | radiation | 1.0 | 10 | < th | dose independent | rect. | 23 | 7 |
| 75 | 55.51 | wind | 1.0 | 90 | < th | dose independent | rect. | 4 | 3 |
| 79 | 55.58 | wind | 1.0 | 90 | > th | dose independent | rect. | 23 | 17 |
| 90 | 55.64 | wind | 5.0 | 10 | < th | dose independent | rect. | 23 | 6 |
| 93 | 55.67 | wind | 1.0 | 90 | < th | dose independent | rect. | 4 | 8 |
| 102 | 55.71 | wind | 1.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 103 | 55.71 | wind | 1.0 | 30 | > th | dose independent | rect. | 23 | 6 |
| 112 | 55.80 | temperature | 10.0 | 10 | > th | dose independent | rect. | 23 | 6 |
| 113 | 55.80 | temperature | 30.0 | 10 | < th | dose independent | rect. | 23 | 6 |
| 114 | 55.80 | humidity | 50.0 | 10 | > th | dose independent | rect. | 23 | 6 |
| 117 | 55.80 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 23 | 6 |
| 123 | 55.80 | temperature | 10.0 | 10 | > th | dose independent | rect. | 5 | 18 |
| 125 | 55.80 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 5 | 18 |
| 131 | 55.85 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 5 | 18 |
| 138 | 55.88 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 5 | 18 |
| 139 | 55.88 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 5 | 18 |
| 143 | 55.97 | wind | 9.0 | 10 | < th | dose independent | rect. | 5 | 18 |
| 145 | 55.97 | wind | 3.0 | 90 | < th | dose dependent | rect. | 4 | 4 |
| 147 | 56.00 | wind | 5.0 | 90 | < th | dose independent | rect. | 22 | 6 |
| 160 | 56.21 | radiation | 1.0 | 30 | < th | dose dependent | sin | 9 | NA |
| 161 | 56.23 | radiation | 1.0 | 30 | > th | dose independent | rect. | 5 | 3 |
| 173 | 56.26 | wind | 5.0 | 270 | < th | dose independent | rect. | 22 | 3 |
| 179 | 56.33 | radiation | 1.0 | 30 | < th | dose independent | sin | 9 | NA |
| 180 | 56.34 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 23 | 6 |
| 184 | 56.39 | radiation | 1.0 | 30 | > th | dose independent | sin | 9 | NA |
| 201 | 56.43 | wind | 1.0 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 209 | 56.50 | temperature | 10.0 | 90 | > th | dose independent | rect. | 22 | 6 |
| 210 | 56.50 | temperature | 30.0 | 90 | < th | dose independent | rect. | 22 | 6 |
| 211 | 56.50 | humidity | 50.0 | 90 | > th | dose independent | rect. | 22 | 6 |
| 214 | 56.50 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 22 | 6 |
| 237 | 56.50 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 4 | 18 |
| 243 | 56.50 | wind | 3.0 | 90 | < th | dose dependent | rect. | 4 | 7 |
| 264 | 56.53 | wind | 1.0 | 90 | < th | dose independent | rect. | 4 | 17 |
| 293 | 56.56 | wind | 1.0 | 90 | < th | dose independent | rect. | 4 | 14 |
| 298 | 56.58 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 23 | 6 |
| 300 | 56.58 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 23 | 6 |
| 306 | 56.60 | radiation | 40.0 | 14400 | < th | dose dependent | rect. | 24 | 5 |
| 308 | 56.61 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 22 | 3 |
| 310 | 56.62 | temperature | 10.0 | 270 | > th | dose independent | rect. | 22 | 3 |
| 311 | 56.62 | temperature | 30.0 | 270 | < th | dose independent | rect. | 22 | 3 |
| 312 | 56.62 | humidity | 50.0 | 270 | > th | dose independent | rect. | 22 | 3 |
| 315 | 56.62 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 22 | 3 |
| 316 | 56.62 | radiation | 1.0 | 270 | < th | dose independent | rect. | 22 | 3 |
| 322 | 56.62 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 22 | 3 |
| 327 | 56.63 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 5 | 3 |
| 329 | 56.64 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 22 | 6 |
| 338 | 56.69 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 22 | 3 |
| 339 | 56.69 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 22 | 3 |
| 341 | 56.70 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 5 | 3 |
| 344 | 56.72 | wind | 5.0 | 10 | < th | dose dependent | rect. | 5 | 3 |
| 369 | 56.75 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 22 | 6 |
| 373 | 56.75 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 22 | 6 |
| 396 | 56.84 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 5 | 18 |
| 404 | 56.88 | wind | 9.0 | 90 | < th | dose dependent | rect. | 22 | 6 |
| 412 | 56.94 | temperature | 20.0 | 10 | > th | dose independent | rect. | 5 | 3 |
| 442 | 56.98 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 23 | 6 |
| 447 | 57.01 | radiation | 10.0 | 4320 | < th | dose dependent | rect. | 24 | 5 |
| 451 | 57.03 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 21 |
| 452 | 57.03 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 21 |
| 453 | 57.04 | wind | 9.0 | 270 | < th | dose dependent | rect. | 22 | 3 |
| 474 | 57.09 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 2 | 19 |
| 475 | 57.09 | wind | 1.0 | 90 | < th | dose dependent | rect. | 4 | 17 |
| 481 | 57.12 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 1 | 21 |
| 482 | 57.12 | wind | 1.0 | 90 | < th | dose dependent | rect. | 4 | 14 |
| 486 | 57.13 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 23 | 6 |
| 551 | 57.27 | wind | 9.0 | 270 | < th | dose independent | rect. | 1 | 21 |
| 557 | 57.29 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 5 | 3 |
| 559 | 57.29 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 5 | 3 |
| 567 | 57.34 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 2 | 19 |
| 572 | 57.34 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 2 | 19 |
| 585 | 57.39 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 5 | 3 |
| 586 | 57.40 | wind | 7.0 | 10 | < th | dose independent | rect. | 5 | 3 |
| 588 | 57.40 | temperature | 10.0 | 10 | > th | dose independent | rect. | 5 | 3 |
| 590 | 57.40 | temperature | 30.0 | 10 | < th | dose independent | rect. | 5 | 3 |
| 591 | 57.40 | humidity | 50.0 | 10 | > th | dose independent | rect. | 5 | 3 |
| 593 | 57.40 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 5 | 3 |
| 594 | 57.40 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 5 | 3 |
| 595 | 57.40 | temperature | 10.0 | 10 | > th | dose independent | rect. | 8 | 21 |
| 601 | 57.43 | wind | 9.0 | 10 | < th | dose independent | rect. | 8 | 21 |
| 604 | 57.44 | temperature | 25.0 | 270 | < th | dose independent | rect. | 3 | 2 |
| 607 | 57.46 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 23 | 5 |
| 610 | 57.47 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 5 | 4 |
| 616 | 57.50 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 23 | 5 |
| 620 | 57.51 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 23 | 6 |
| 621 | 57.52 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 23 | 2 |
| 623 | 57.52 | wind | 9.0 | 270 | < th | dose independent | rect. | 2 | 19 |
| 645 | 57.58 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 8 | 21 |
| 665 | 57.64 | radiation | 40.0 | 10 | < th | dose independent | rect. | 5 | 3 |
| 667 | 57.64 | humidity | 50.0 | 10 | > th | dose independent | rect. | 5 | 18 |
| 672 | 57.65 | humidity | 50.0 | 270 | > th | dose independent | rect. | 2 | 19 |
| 707 | 57.70 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 24 | 4 |
| 712 | 57.71 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 23 | 2 |
| 746 | 57.76 | wind | 1.0 | 270 | > th | dose independent | rect. | 22 | 3 |
| 757 | 57.78 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 23 | 5 |
| 796 | 57.83 | wind | 7.0 | 90 | < th | dose independent | rect. | 8 | 20 |
| 797 | 57.83 | wind | 7.0 | 270 | < th | dose independent | rect. | 6 | 21 |
| 849 | 57.87 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 23 | 2 |
| 860 | 57.91 | wind | 1.0 | 30 | > th | dose independent | rect. | 8 | 21 |
| 873 | 57.94 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 8 | 21 |
| 875 | 57.94 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 8 | 21 |
| 897 | 57.99 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 10 |
| 967 | 58.11 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 3 |
| 969 | 58.11 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 971 | 58.12 | radiation | 20.0 | 270 | < th | dose independent | rect. | 16 | 14 |
| 991 | 58.17 | wind | 7.0 | 270 | < th | dose independent | rect. | 5 | 23 |