Os02g0736200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to RNA-directed RNA polymerase (EC 2.7.7.48).
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Os02g0736200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to RNA-directed RNA polymerase (EC 2.7.7.48).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 143.9 | 0.564 | 6.05 | 2.25 | 0.0148 | -1.28 | 1.22 | -4.04 | 1.16 | 23.3 | 1005 | 13801 | -- | -- |
| 170.87 | 0.609 | 6.15 | 1.21 | 0.0429 | -1.17 | 1.42 | -- | 0.993 | 23.1 | 1005 | 10672 | -- | -- |
| 149.63 | 0.57 | 6.06 | 2.28 | 0.126 | -1.28 | -- | -4.16 | 1.17 | 18.1 | 1005 | 14599 | -- | -- |
| 172.85 | 0.612 | 6.11 | 1.07 | 0.121 | -1.59 | -- | -- | 1.15 | 18.7 | 998.3 | 10316 | -- | -- |
| 150.17 | 0.571 | 6.05 | 2.21 | -- | -1.27 | -- | -4.05 | 1.17 | -- | 1005 | 14074 | -- | -- |
| 218.95 | 0.694 | 6.11 | 1.48 | 0.0378 | -- | 1.27 | -- | 1.16 | 23.3 | -- | -- | -- | -- |
| 225.46 | 0.703 | 6.11 | 1.43 | 0.0984 | -- | -- | -- | 1.16 | 18.7 | -- | -- | -- | -- |
| 173.52 | 0.614 | 6.11 | 1.05 | -- | -1.57 | -- | -- | 1.14 | -- | 998.7 | 10339 | -- | -- |
| 176.06 | 0.618 | 6.2 | -- | 0.0784 | -1.81 | -- | -- | 0.755 | 19.9 | 1004 | 29558 | -- | -- |
| 225.97 | 0.702 | 6.11 | 1.43 | -- | -- | -- | -- | 1.16 | -- | -- | -- | -- | -- |
| 279.19 | 0.782 | 6.15 | -- | 0.0837 | -- | -- | -- | 1 | 19.7 | -- | -- | -- | -- |
| 176.46 | 0.619 | 6.2 | -- | -- | -1.79 | -- | -- | 0.756 | -- | 1004 | 29557 | -- | -- |
| 279.57 | 0.78 | 6.15 | -- | -- | -- | -- | -- | 0.999 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 143.07 | atmosphere | 1005.0 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 2 | 143.11 | atmosphere | 1005.0 | 14400 | > th | dose dependent | rect. | 5 | 6 |
| 18 | 143.22 | atmosphere | 1005.0 | 14400 | > th | dose dependent | rect. | 9 | 2 |
| 52 | 143.53 | atmosphere | 1005.0 | 14400 | > th | dose dependent | rect. | 19 | 17 |
| 88 | 143.73 | atmosphere | 1005.0 | 14400 | > th | dose dependent | sin | 5 | NA |
| 107 | 143.77 | atmosphere | 1005.0 | 14400 | > th | dose dependent | rect. | 3 | 21 |
| 121 | 143.81 | atmosphere | 1005.0 | 14400 | > th | dose dependent | rect. | 19 | 4 |
| 217 | 143.98 | atmosphere | 1005.0 | 14400 | > th | dose dependent | no | NA | NA |
| 218 | 143.98 | atmosphere | 1005.0 | 14400 | > th | dose dependent | rect. | 19 | 1 |
| 264 | 144.04 | atmosphere | 1005.0 | 14400 | > th | dose dependent | rect. | 9 | 23 |
| 483 | 144.84 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 7 | 2 |
| 485 | 144.87 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 594 | 146.60 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 699 | 148.80 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 5 | 15 |
| 706 | 148.88 | atmosphere | 1010.0 | 14400 | < th | dose independent | sin | 2 | NA |
| 709 | 148.91 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 5 | 18 |
| 713 | 148.93 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 732 | 149.08 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 734 | 149.08 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 744 | 149.13 | atmosphere | 1010.0 | 14400 | > th | dose independent | sin | 1 | NA |
| 787 | 149.43 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 22 | 1 |
| 838 | 149.76 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 22 | 14 |
| 851 | 149.83 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 19 | 17 |
| 884 | 150.01 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 19 | 21 |
| 931 | 150.16 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 15 | 21 |
| 947 | 150.22 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 22 | 22 |
| 982 | 150.34 | atmosphere | 1010.0 | 14400 | < th | dose independent | no | NA | NA |