Os04g0465700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RNA dependent RNA polymerase family protein.
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Os04g0465700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : RNA dependent RNA polymerase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 90.97 | 0.448 | 6.96 | 0.998 | 0.595 | -1.3 | -0.0234 | -0.303 | -0.0223 | 16.8 | 24.1 | 6770 | -- | -- |
| 91.01 | 0.444 | 6.97 | 0.938 | 0.602 | -1.29 | -0.135 | -- | -0.0479 | 16.9 | 24 | 6820 | -- | -- |
| 90.8 | 0.444 | 6.96 | 1.01 | 0.598 | -1.3 | -- | -0.333 | -0.0313 | 16.8 | 24 | 6806 | -- | -- |
| 90.92 | 0.444 | 6.98 | 0.89 | 0.595 | -1.31 | -- | -- | -0.0693 | 16.9 | 23.95 | 6820 | -- | -- |
| 109.13 | 0.487 | 6.95 | 0.951 | -- | -1.24 | -- | -0.128 | -0.00469 | -- | 24.36 | 7522 | -- | -- |
| 152.3 | 0.579 | 6.86 | 1.57 | 0.532 | -- | -0.0881 | -- | 0.449 | 17.4 | -- | -- | -- | -- |
| 152.32 | 0.578 | 6.86 | 1.57 | 0.532 | -- | -- | -- | 0.449 | 17.4 | -- | -- | -- | -- |
| 105.05 | 0.477 | 6.98 | 1.07 | -- | -1.2 | -- | -- | 0.0827 | -- | 27.1 | 1825 | -- | -- |
| 109.02 | 0.486 | 7.01 | -- | 0.579 | -1.56 | -- | -- | -0.23 | 17.1 | 24.2 | 7167 | -- | -- |
| 167.06 | 0.604 | 6.85 | 1.56 | -- | -- | -- | -- | 0.436 | -- | -- | -- | -- | -- |
| 217.67 | 0.69 | 6.9 | -- | 0.506 | -- | -- | -- | 0.274 | 17.5 | -- | -- | -- | -- |
| 125.72 | 0.522 | 7.02 | -- | -- | -1.55 | -- | -- | -0.301 | -- | 23.8 | 7777 | -- | -- |
| 230.99 | 0.709 | 6.89 | -- | -- | -- | -- | -- | 0.263 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 91.88 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 5 | 92.51 | temperature | 20 | 720 | > th | dose dependent | sin | 6 | NA |
| 16 | 93.56 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 17 | 93.93 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 19 | 94.00 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 20 | 94.06 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 21 | 94.08 | temperature | 20 | 30 | > th | dose dependent | rect. | 3 | 19 |
| 22 | 94.10 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 3 |
| 24 | 94.11 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 3 |
| 31 | 94.21 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 38 | 94.33 | temperature | 20 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 40 | 94.38 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 3 |
| 47 | 94.49 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 3 |
| 59 | 94.63 | temperature | 20 | 4320 | > th | dose dependent | rect. | 17 | 17 |
| 77 | 94.81 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 2 |
| 88 | 94.90 | temperature | 20 | 4320 | > th | dose dependent | rect. | 1 | 9 |
| 119 | 95.07 | temperature | 20 | 4320 | > th | dose dependent | rect. | 17 | 12 |
| 137 | 95.13 | temperature | 20 | 4320 | > th | dose dependent | sin | 9 | NA |
| 169 | 95.25 | temperature | 20 | 4320 | > th | dose dependent | rect. | 17 | 9 |
| 210 | 95.36 | temperature | 30 | 4320 | > th | dose independent | rect. | 14 | 2 |
| 228 | 95.40 | temperature | 30 | 1440 | < th | dose dependent | rect. | 7 | 2 |
| 229 | 95.40 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 21 |
| 243 | 95.43 | temperature | 20 | 270 | > th | dose dependent | rect. | 1 | 21 |
| 277 | 95.50 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 23 |
| 295 | 95.52 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 23 |
| 316 | 95.57 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 344 | 95.62 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 20 |
| 523 | 95.99 | temperature | 10 | 1440 | > th | dose dependent | rect. | 6 | 18 |
| 591 | 96.07 | temperature | 10 | 1440 | > th | dose dependent | rect. | 4 | 19 |