BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0724000 Os02g0724000|AB001888
(407 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0724000 Zinc finger, B-box domain containing protein 714 0.0
Os06g0298200 Similar to Oryza sativa (indica cultivar-group... 511 e-145
Os08g0536300 Similar to Hd1 72 1e-12
Os07g0667300 Zinc finger, B-box domain containing protein 68 9e-12
Os03g0351100 Similar to CONSTANS-like protein CO9 (Fragment) 67 3e-11
>Os02g0724000 Zinc finger, B-box domain containing protein
Length = 407
Score = 714 bits (1844), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/407 (86%), Positives = 352/407 (86%)
Query: 1 MDALCDFCREQRSMVYCRSDAASLCLSCDRNVHSANALSRRHTRTLLCDRCVGQPAAVRC 60
MDALCDFCREQRSMVYCRSDAASLCLSCDRNVHSANALSRRHTRTLLCDRCVGQPAAVRC
Sbjct: 1 MDALCDFCREQRSMVYCRSDAASLCLSCDRNVHSANALSRRHTRTLLCDRCVGQPAAVRC 60
Query: 61 LEENTSLCQNCDWNXXXXXXXXXXXKRQTINCYSGCPSSAELSRIWSFSMDIPTVAAEPN 120
LEENTSLCQNCDWN KRQTINCYSGCPSSAELSRIWSFSMDIPTVAAEPN
Sbjct: 61 LEENTSLCQNCDWNGHGAASSAAGHKRQTINCYSGCPSSAELSRIWSFSMDIPTVAAEPN 120
Query: 121 CEEGINMMSINDNDVNNHCGAPEDGRLLDIASTALMSDLPTGDKFKPLIGSSSGDGMNLL 180
CEEGINMMSINDNDVNNHCGAPEDGRLLDIASTALMSDLPTGDKFKPLIGSSSGDGMNLL
Sbjct: 121 CEEGINMMSINDNDVNNHCGAPEDGRLLDIASTALMSDLPTGDKFKPLIGSSSGDGMNLL 180
Query: 181 PLNSDQPAEPVSTTPKAPCVTDKDMFNDGSVYGDFCVDDADLTFENYEELFGTSHVQTEQ 240
PLNSDQPAEPVSTTPKAPCVTDKDMFNDGSVYGDFCVDDADLTFENYEELFGTSHVQTEQ
Sbjct: 181 PLNSDQPAEPVSTTPKAPCVTDKDMFNDGSVYGDFCVDDADLTFENYEELFGTSHVQTEQ 240
Query: 241 LFDDAGIDSYFEMKDVPADESNEQPKPVQPECSNVASVDSGMSNPAARADSSHCIPGRQA 300
LFDDAGIDSYFEMKDVPADESNEQPKPVQPECSNVASVDSGMSNPAARADSSHCIPGRQA
Sbjct: 241 LFDDAGIDSYFEMKDVPADESNEQPKPVQPECSNVASVDSGMSNPAARADSSHCIPGRQA 300
Query: 301 ISNISLSFSGLTGESSAGYFQDCGVSSMILMGEPPWHXXXXXXXXXXXXRDNALTXXXXX 360
ISNISLSFSGLTGESSAGYFQDCGVSSMILMGEPPWH RDNALT
Sbjct: 301 ISNISLSFSGLTGESSAGYFQDCGVSSMILMGEPPWHPPGPESSSAGGSRDNALTRYKEK 360
Query: 361 XXXXXXXXXXXYXXXXXXXXXXXXXXXXFVKAGEAYDYDPLSQTRSY 407
Y FVKAGEAYDYDPLSQTRSY
Sbjct: 361 KKRRKFDKKIRYASRKARADVRKRVKGRFVKAGEAYDYDPLSQTRSY 407
>Os06g0298200 Similar to Oryza sativa (indica cultivar-group) Hd1
Length = 407
Score = 511 bits (1317), Expect = e-145, Method: Compositional matrix adjust.
Identities = 263/408 (64%), Positives = 292/408 (71%), Gaps = 2/408 (0%)
Query: 1 MDALCDFCREQRSMVYCRSDAASLCLSCDRNVHSANALSRRHTRTLLCDRCVGQPAAVRC 60
M ALCDFC EQRSMVYCRSDAASLCLSCDRNVHSANALSRRHTRTLLCDRC QPA VRC
Sbjct: 1 MGALCDFCGEQRSMVYCRSDAASLCLSCDRNVHSANALSRRHTRTLLCDRCASQPAMVRC 60
Query: 61 LEENTSLCQNCDWNXXXXXXXXXXXKRQTINCYSGCPSSAELSRIWSFSMDIPTVAAEPN 120
L EN SLCQNCDWN KRQTINCYSGCPSS+ELS+IW+F DIP VA EPN
Sbjct: 61 LVENASLCQNCDWNGHSAGSSAAGHKRQTINCYSGCPSSSELSKIWTFVSDIPNVAPEPN 120
Query: 121 CEEGINMMSINDNDVNNHCGAPEDGRLLDIASTALMSDLPTGDKFKPLIGSSSGDGMNLL 180
CE+GI+MMSI+D+ V+N A D LLDIAS LMSDL T K K LIGSSS G+NLL
Sbjct: 121 CEQGISMMSISDSGVSNQDNAAGDSSLLDIASATLMSDLGTAGKPKSLIGSSSEAGVNLL 180
Query: 181 PLNSDQPAEPV-STTPKAPCVTDKDMFNDGSVYGDFCVDDADLTFENYEELFGTSHVQTE 239
PL +DQ A V ST+ K P D+DMF+ S+Y DFCVDD DL+FENYEELFGTSH+QTE
Sbjct: 181 PLATDQMAGSVDSTSAKVPYTADQDMFSKDSIYEDFCVDDVDLSFENYEELFGTSHIQTE 240
Query: 240 QLFDDAGIDSYFEMKDVPADESNEQPKPVQPECSNVASVDSGMSNPAARADSSHCIPGRQ 299
QLFDDAGIDSYFE K++P+ S+E PK +QP SN S DSGMS P A+ DSS CIP RQ
Sbjct: 241 QLFDDAGIDSYFESKEIPSGNSDE-PKLMQPVTSNAVSADSGMSIPGAKGDSSLCIPVRQ 299
Query: 300 AISNISLSFSGLTGESSAGYFQDCGVSSMILMGEPPWHXXXXXXXXXXXXRDNALTXXXX 359
A S+ISLSFSGLTGESSAG +QDCGVS ++LMGEPPWH RD+A+T
Sbjct: 300 ARSSISLSFSGLTGESSAGDYQDCGVSPVLLMGEPPWHPPGPEGSFAGATRDDAITRYKE 359
Query: 360 XXXXXXXXXXXXYXXXXXXXXXXXXXXXXFVKAGEAYDYDPLSQTRSY 407
Y FVKAGEAYDYDPL +TRSY
Sbjct: 360 KKKRRKFDKKIRYASRKARADVRKRVKGRFVKAGEAYDYDPLCETRSY 407
>Os08g0536300 Similar to Hd1
Length = 488
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/111 (41%), Positives = 66/111 (59%), Gaps = 7/111 (6%)
Query: 5 CDFCREQRSMVYCRSDAASLCLSCDRNVHSANALSRRHTRTLLCDRCVGQPAAVRCLEEN 64
CD+C E + ++CR+DAA LC++CDR+VH+ANALSR+H R LC C +PAA R +
Sbjct: 18 CDYCGEAAAALHCRADAARLCVACDRHVHAANALSRKHVRAPLCAACAARPAAARVASAS 77
Query: 65 TS--LCQNCDWNXXXXXXXXXXXKRQTINCYSGCPSSAELSRIWSFSMDIP 113
LC +CD R + +SGCP++AEL+ W +D+P
Sbjct: 78 APAFLCADCDTGCGGDDGAAL---RVPVEGFSGCPAAAELAASW--GLDLP 123
>Os07g0667300 Zinc finger, B-box domain containing protein
Length = 380
Score = 68.2 bits (165), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 55/108 (50%), Gaps = 8/108 (7%)
Query: 5 CDFCREQRSMVYCRSDAASLCLSCDRNVHSANALSRRHTRTLLCDRCVGQPAAVRCLEEN 64
CDFC ++VYCR+D+A LCL CDR+VH+AN +S RH R LC C A +
Sbjct: 24 CDFCGGLPAVVYCRADSARLCLPCDRHVHAANTVSTRHARAPLCSACRAA-PAAAFHRGD 82
Query: 65 TSLCQNCDWNXXXXXXXXXXXK-------RQTINCYSGCPSSAELSRI 105
LC +CD++ R + Y+GCPS EL+ I
Sbjct: 83 GFLCSSCDFDERLRRGSIGGGGDELPLDDRAAVEGYTGCPSIGELAAI 130
>Os03g0351100 Similar to CONSTANS-like protein CO9 (Fragment)
Length = 403
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 59/111 (53%), Gaps = 5/111 (4%)
Query: 3 ALCDFCREQRSMVYCRSDAASLCLSCDRNVHSANALSRRHTRTLLCDRCVGQPAAVRCLE 62
A CD+C + ++VYCR+DAA LCL CDR+VH AN + RH R LC C A R
Sbjct: 36 AGCDYCGDAAAVVYCRADAARLCLPCDRHVHGANGVCSRHARAPLCAACAAAGAVFR-RG 94
Query: 63 ENTSLCQNCDWNXXXXXX----XXXXXKRQTINCYSGCPSSAELSRIWSFS 109
LC NCD++ R T++ Y+GCPS+ +L+ + S
Sbjct: 95 AGGFLCSNCDFSRHRHGGERDPAAPLHDRSTVHPYTGCPSALDLAALLGIS 145
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.131 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,969,574
Number of extensions: 547003
Number of successful extensions: 1427
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 1408
Number of HSP's successfully gapped: 8
Length of query: 407
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 304
Effective length of database: 11,657,759
Effective search space: 3543958736
Effective search space used: 3543958736
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 157 (65.1 bits)