BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0607700 Os02g0607700|AK109261
(298 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0607700 Glucose/ribitol dehydrogenase family protein 508 e-144
Os01g0929500 Similar to Carbonyl reductase-like protein 201 4e-52
Os04g0496000 Glucose/ribitol dehydrogenase family protein 182 2e-46
Os04g0531900 Glucose/ribitol dehydrogenase family protein 164 8e-41
Os04g0532100 Glucose/ribitol dehydrogenase family protein 145 3e-35
Os02g0640600 138 4e-33
Os07g0685800 Glucose/ribitol dehydrogenase family protein 126 2e-29
Os04g0531750 Glucose/ribitol dehydrogenase family protein 95 6e-20
>Os02g0607700 Glucose/ribitol dehydrogenase family protein
Length = 298
Score = 508 bits (1308), Expect = e-144, Method: Compositional matrix adjust.
Identities = 259/298 (86%), Positives = 259/298 (86%)
Query: 1 MDLSSSKEATPPPEAWWTGETVAVVTGANRGIGHALAARLAEQGLAVVLTXXXXXXXXXX 60
MDLSSSKEATPPPEAWWTGETVAVVTGANRGIGHALAARLAEQGLAVVLT
Sbjct: 1 MDLSSSKEATPPPEAWWTGETVAVVTGANRGIGHALAARLAEQGLAVVLTARDGARGEAA 60
Query: 61 XXXXXXXXXXSVRFRRLDVSDPASVAAFASWLRDELGGLDILVNNAAVSFNEIDTNSVEH 120
SVRFRRLDVSDPASVAAFASWLRDELGGLDILVNNAAVSFNEIDTNSVEH
Sbjct: 61 AAALRARGLRSVRFRRLDVSDPASVAAFASWLRDELGGLDILVNNAAVSFNEIDTNSVEH 120
Query: 121 AETVLRTNFYGAKMLIEALLPLFRRSAANSRILNISSQLGLLNKVRDPSLRSMLLDEASL 180
AETVLRTNFYGAKMLIEALLPLFRRSAANSRILNISSQLGLLNKVRDPSLRSMLLDEASL
Sbjct: 121 AETVLRTNFYGAKMLIEALLPLFRRSAANSRILNISSQLGLLNKVRDPSLRSMLLDEASL 180
Query: 181 TEGKIERMASRFLAEVKDGTWSAPGRGWPAVWTDYAVSKLALNAYSRVLAARLARGGDRV 240
TEGKIERMASRFLAEVKDGTWSAPGRGWPAVWTDYAVSKLALNAYSRVLAARLARGGDRV
Sbjct: 181 TEGKIERMASRFLAEVKDGTWSAPGRGWPAVWTDYAVSKLALNAYSRVLAARLARGGDRV 240
Query: 241 AVNCFCPGFTRTDMTRGWGTRTAEEXXXXXXXXXXXXXXXXXXXKFFKWCTPQLYSKL 298
AVNCFCPGFTRTDMTRGWGTRTAEE KFFKWCTPQLYSKL
Sbjct: 241 AVNCFCPGFTRTDMTRGWGTRTAEEAGRVAAGLALLPPGDLPTGKFFKWCTPQLYSKL 298
>Os01g0929500 Similar to Carbonyl reductase-like protein
Length = 300
Score = 201 bits (512), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 119/254 (46%), Positives = 160/254 (62%), Gaps = 12/254 (4%)
Query: 22 VAVVTGANRGIGHALAARLAEQGLAVVLTXXXXX---XXXXXXXXXXXXXXXSVRFRRLD 78
VAVVTGANRGIG+ A +LA GL VVLT SV +R+LD
Sbjct: 19 VAVVTGANRGIGYEAARQLATHGLHVVLTSRDAARGRDATEQIRAAAGKPGVSVEWRQLD 78
Query: 79 VSDPASVAAFASWLRDELGGLDILVNNAAVSFNEIDTNSVEHAETVLRTNFYGAKMLIEA 138
V+D ASV FA+W+ GG+ +LVNNA V+FN NSVE AE V+ TN++G K +IEA
Sbjct: 79 VTDAASVEGFATWVERTHGGVHVLVNNAGVNFNRGADNSVEFAEQVIETNYFGTKRMIEA 138
Query: 139 LLPLFRRSAANSRILNISSQLGLL----NKVRDPSLRSMLLDEASLTEGKIERMASRFLA 194
++PL S RI+N+SS+LG + N++ DPSLR LL++ L+E I M +FL
Sbjct: 139 MMPLMITSPHGGRIVNVSSRLGRVNGRRNRIGDPSLRERLLNDDHLSEELINEMVMKFLE 198
Query: 195 EVKDGTWSAPGRGWPAVWTDYAVSKLALNAYSRVLAARLARG--GDRVAVNCFCPGFTRT 252
+ K WS+ G WP ++TDY++SKLA+NAY+R+LA RL G ++ +NCFCPG+ +T
Sbjct: 199 QTKQDNWSS-GNEWPQMYTDYSISKLAVNAYTRLLARRLLDRPEGQKIYINCFCPGWVKT 257
Query: 253 DMTRGW-GTRTAEE 265
MT GW G +AEE
Sbjct: 258 AMT-GWEGNISAEE 270
>Os04g0496000 Glucose/ribitol dehydrogenase family protein
Length = 142
Score = 182 bits (463), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 90/138 (65%), Positives = 100/138 (72%), Gaps = 2/138 (1%)
Query: 161 LLNKVRDPSLRSMLLDEASLTEGKIERMASRFLAEVKDGTWSAPGRGWPAVWTDYAVSKL 220
+L KV DP L+ +L DE LTE ++E MASRFLA+VKDGTW G+GWP VWTDY+VSKL
Sbjct: 7 VLQKVSDPELKRLLQDEERLTEAEVEGMASRFLAQVKDGTWR--GQGWPKVWTDYSVSKL 64
Query: 221 ALNAYSRVLAARLARGGDRVAVNCFCPGFTRTDMTRGWGTRTAEEXXXXXXXXXXXXXXX 280
ALNAY+RVLA RL GDRV+VNCFCPGFTRTDMTRGWG RTAEE
Sbjct: 65 ALNAYARVLARRLQARGDRVSVNCFCPGFTRTDMTRGWGKRTAEEAAEIGARLALLPPGE 124
Query: 281 XXXXKFFKWCTPQLYSKL 298
FFKWCTPQLYSKL
Sbjct: 125 LPTGTFFKWCTPQLYSKL 142
>Os04g0531900 Glucose/ribitol dehydrogenase family protein
Length = 307
Score = 164 bits (415), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 102/270 (37%), Positives = 143/270 (52%), Gaps = 32/270 (11%)
Query: 22 VAVVTGANRGIGHALAARLAEQGLAVVLTXXXXXXXXXXXXXXXXXXXXSVRFRRLDVSD 81
VAVVTG N+GIG + +LA G+ VVLT SV F +L+V+D
Sbjct: 13 VAVVTGGNKGIGLEVCRQLAADGITVVLTARDETRGVEAAEKLSGMGLSSVVFHQLEVTD 72
Query: 82 PASVAAFASWLRDELGGLDILVNNAAVSFNE----IDTN--------------------- 116
+SVA A +L+ G LDILVNNAAV E +DTN
Sbjct: 73 SSSVARLADFLKTRFGKLDILVNNAAVGGMEYVQGVDTNKEQFVSMDKKQRLAWLNKQGR 132
Query: 117 -SVEHAETVLRTNFYGAKMLIEALLPLFRRSAANSRILNISSQLGLLNKVRDPSLRSMLL 175
+ + A+ ++TN+YG K++I+ALLPL +S+ RI+N+SS GLL V + LR L
Sbjct: 133 ETYDAAKNGVQTNYYGTKIVIQALLPLLLQSSGEGRIVNVSSDFGLLRVVNNEDLRKELD 192
Query: 176 DEASLTEGKIERMASRFLAEVKDGTWSAPGRGWPAVWTDYAVSKLALNAYSRVLAARLAR 235
D +LTE +++ + FL + + G A GWP + Y +K+A+NAY+R+LA R
Sbjct: 193 DVDNLTEERLDEVLDSFLKDFEAGALEA--HGWPTAFAAYKTAKVAMNAYTRILARRHP- 249
Query: 236 GGDRVAVNCFCPGFTRTDMTRGWGTRTAEE 265
+ VNC PG+ +TDMT G T EE
Sbjct: 250 ---ELRVNCAHPGYVKTDMTIDSGFLTPEE 276
>Os04g0532100 Glucose/ribitol dehydrogenase family protein
Length = 309
Score = 145 bits (367), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 96/274 (35%), Positives = 143/274 (52%), Gaps = 37/274 (13%)
Query: 22 VAVVTGANRGIGHALAARLAEQGLAVVLTXXXXXXXXXXXXXXXXXXXXSVRFRRLDVSD 81
+AVVTG N+GIG + +LA G VVLT SV F +LDV+D
Sbjct: 13 IAVVTGGNKGIGLEVCRQLAGNGATVVLTARDEAKGAAAVEKLHGLGLSSVIFHQLDVTD 72
Query: 82 PASVAAFASWLRDELGGLDILVNNAAVS------------------FNEIDTN------- 116
+S+A A +L G LDILVNNAAV F+ +D +
Sbjct: 73 ASSIARLAEFLESRFGRLDILVNNAAVGGIVPVDDPSFGLLPTEEKFSGMDGHQRIEWMW 132
Query: 117 -----SVEHAETVLRTNFYGAKMLIEALLPLFRRSAANSRILNISSQLGLLNKVRDPSLR 171
+ + A+ L+TN+YG K + EALLPL + S+++ RI+N++S GLL + L+
Sbjct: 133 KNCRQTYDAAKAGLKTNYYGTKNVTEALLPLLQ-SSSDGRIVNVASSFGLLRFFTNEELK 191
Query: 172 SMLLDEASLTEGKIERMASRFLAEVKDGTWSAPGRGWPAVWTDYAVSKLALNAYSRVLAA 231
L D SL+E +++ + F+ + + G + RGWP ++ Y V+K A++AY+R+
Sbjct: 192 RELNDADSLSEERLDELLGMFVRDFEAGAVAE--RGWPTEFSAYKVAKAAMSAYARI--- 246
Query: 232 RLARGGDRVAVNCFCPGFTRTDMTRGWGTRTAEE 265
LAR + VNC PG+ +TD+TR G T EE
Sbjct: 247 -LARKRPALRVNCVDPGYVKTDLTRNSGLLTPEE 279
>Os02g0640600
Length = 403
Score = 138 bits (348), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 90/275 (32%), Positives = 133/275 (48%), Gaps = 38/275 (13%)
Query: 22 VAVVTGANRGIGHALAARLAEQGLAVVLTXXXXXXXXXXXXXXXXXXXXSVRFRRLDVSD 81
VAVVTG NRG+G + +LA G+ VVLT V F +LDV+D
Sbjct: 28 VAVVTGGNRGVGLEICRQLASNGILVVLTARDEKKGSQAVKALEQSGLSGVIFHQLDVTD 87
Query: 82 PASVAAFASWLRDELGGLDILVNNAAVSFNEID--------------------------- 114
+S+ ++R + G +ILVNNAA+ ID
Sbjct: 88 RSSIMLLVEFIRTKFGKFNILVNNAAIGGTTIDPERLRELLEQDPKASFQEDLMGFLNSY 147
Query: 115 ----TNSVEHAETVLRTNFYGAKMLIEALLPLFRRSAANSRILNISSQLGLLNKVRDPSL 170
+ E A+ L NFYG K + + L+PL S + +++N++S++ L + + +
Sbjct: 148 MGSLQQNYEMAKECLEINFYGTKDVTDCLMPLLLLSNS-GKVINLTSKISQLQFISNEGV 206
Query: 171 RSMLLDEASLTEGKIERMASRFLAEVKDGTWSAPGRGWPAVWTDYAVSKLALNAYSRVLA 230
+L D +L++ K++ +AS FL + KDG A GW V + YAVSK +NAYSR+LA
Sbjct: 207 IKVLSDIDNLSDEKLKDVASIFLKDFKDGNLEA--HGWQPVVSAYAVSKTLVNAYSRLLA 264
Query: 231 ARLARGGDRVAVNCFCPGFTRTDMTRGWGTRTAEE 265
R + V C PGF +TDM G G + EE
Sbjct: 265 KRHP----SLEVCCVNPGFVKTDMNYGIGLISVEE 295
>Os07g0685800 Glucose/ribitol dehydrogenase family protein
Length = 373
Score = 126 bits (317), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 87/274 (31%), Positives = 129/274 (47%), Gaps = 34/274 (12%)
Query: 20 ETVAVVTGANRGIGHALAARLAEQGLAVVLTXXXXXXXXXXXXXXXXXXXXS-VRFRRLD 78
E +AVVTG NRGIG + +LA QG+ V+LT S + F +LD
Sbjct: 76 ERLAVVTGGNRGIGLEVCRQLALQGVTVILTARDEKRGKDAVESLCHESNLSNIIFHQLD 135
Query: 79 VSDPASVAAFASWLRDELGGLDILVNNAAVSFNEIDTNSV-------------------- 118
+ D S A+ A ++ G LDILVNNA V +D + +
Sbjct: 136 ILDGNSRASLARYINSRFGKLDILVNNAGVGGVAVDQDGLRALNIDPRVWLSGKAVNLIQ 195
Query: 119 -------EHAETVLRTNFYGAKMLIEALLPLFRRSAANSRILNISSQLGLLNKVRDPSLR 171
+ A L TN+YG K + EALLPL ++S + +RI+N +S L ++ + LR
Sbjct: 196 SVIVQTYDEAVKCLNTNYYGLKWITEALLPLLKQSPSGARIVNTTSLRSELKRIPNEKLR 255
Query: 172 SMLLDEASLTEGKIERMASRFLAEVKDGTWSAPGRGWPAVWTDYAVSKLALNAYSRVLAA 231
L + E +IE M + FL ++K+ GWP + Y++SK +N Y+R+LA
Sbjct: 256 DELRNIDIWDEARIEAMLNEFLLDLKNERLEEA--GWPTMLPAYSMSKTVVNLYTRILAK 313
Query: 232 RLARGGDRVAVNCFCPGFTRTDMTRGWGTRTAEE 265
R + +NC PGF T++ G EE
Sbjct: 314 R----HPEMRINCVHPGFVNTEINWNTGIIPPEE 343
>Os04g0531750 Glucose/ribitol dehydrogenase family protein
Length = 185
Score = 95.1 bits (235), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 85/167 (50%), Gaps = 26/167 (15%)
Query: 22 VAVVTGANRGIGHALAARLAEQGLAVVLTXXXXXXXXXXXXXXXXXXXXSVRFRRLDVSD 81
VAVVTG N+GIG + +LA G+ VVLT V F L+V+D
Sbjct: 13 VAVVTGGNKGIGLEVCRQLAADGITVVLTARDETRGVEAAEKLRGMGLSCVIFHHLEVTD 72
Query: 82 PASVAAFASWLRDELGGLDILVNNAAVSFNE----IDTN--------------------- 116
+SV+ A +L G L+ILVNNAAVS E +DTN
Sbjct: 73 SSSVSRLADFLTTRFGKLEILVNNAAVSGMEHAQRVDTNEEQFVGMDKQQRLEWLNKQGR 132
Query: 117 -SVEHAETVLRTNFYGAKMLIEALLPLFRRSAANSRILNISSQLGLL 162
+ + A+ ++TN+YG K++I+ LLPL +S+ RI+N+SS GLL
Sbjct: 133 ETYDAAKNGVQTNYYGTKLVIQTLLPLLLQSSGEGRIVNVSSDAGLL 179
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.132 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,536,833
Number of extensions: 280822
Number of successful extensions: 1007
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 993
Number of HSP's successfully gapped: 9
Length of query: 298
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 198
Effective length of database: 11,814,401
Effective search space: 2339251398
Effective search space used: 2339251398
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)