BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0602400 Os02g0602400|AK069111
         (271 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0602400  Mitochodrial transcription termination factor-...   559   e-159
Os08g0515800  Mitochodrial transcription termination factor-...   119   2e-27
Os03g0785200  Mitochodrial transcription termination factor-...   114   9e-26
Os02g0783100  Mitochodrial transcription termination factor-...   111   7e-25
Os05g0404000  Mitochodrial transcription termination factor-...   109   3e-24
Os07g0134700  Mitochodrial transcription termination factor-...   107   1e-23
Os07g0583200  Mitochodrial transcription termination factor-...    93   3e-19
Os03g0360600  Mitochodrial transcription termination factor-...    79   4e-15
>Os02g0602400 Mitochodrial transcription termination factor-related family
           protein
          Length = 271

 Score =  559 bits (1440), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 271/271 (100%), Positives = 271/271 (100%)

Query: 1   MDHEEIKNVVRKFPAFAYYNVDRKIKPLVALLLELGVPRSNIPGIIKKRPQLCGISLSDN 60
           MDHEEIKNVVRKFPAFAYYNVDRKIKPLVALLLELGVPRSNIPGIIKKRPQLCGISLSDN
Sbjct: 1   MDHEEIKNVVRKFPAFAYYNVDRKIKPLVALLLELGVPRSNIPGIIKKRPQLCGISLSDN 60

Query: 61  LKPMMTYLENVGINKDKWSKVLSRFPALLTYSRQKVETTVSFLTELGVPKENIGKILTRC 120
           LKPMMTYLENVGINKDKWSKVLSRFPALLTYSRQKVETTVSFLTELGVPKENIGKILTRC
Sbjct: 61  LKPMMTYLENVGINKDKWSKVLSRFPALLTYSRQKVETTVSFLTELGVPKENIGKILTRC 120

Query: 121 PHIMSYSVNDNLRPTAEYFQSIGADAASLIQKSPQAFGLNIEAKLKPITEFFLERDFTME 180
           PHIMSYSVNDNLRPTAEYFQSIGADAASLIQKSPQAFGLNIEAKLKPITEFFLERDFTME
Sbjct: 121 PHIMSYSVNDNLRPTAEYFQSIGADAASLIQKSPQAFGLNIEAKLKPITEFFLERDFTME 180

Query: 181 EIGTMANRFGIIHTLSMEDNLLPKYEYFLTMGYPRNELVKFPQYFGYSLEQRIKPRYARM 240
           EIGTMANRFGIIHTLSMEDNLLPKYEYFLTMGYPRNELVKFPQYFGYSLEQRIKPRYARM
Sbjct: 181 EIGTMANRFGIIHTLSMEDNLLPKYEYFLTMGYPRNELVKFPQYFGYSLEQRIKPRYARM 240

Query: 241 IDCGVRLILNQLLSVSDSRFEDILRKRMDGI 271
           IDCGVRLILNQLLSVSDSRFEDILRKRMDGI
Sbjct: 241 IDCGVRLILNQLLSVSDSRFEDILRKRMDGI 271
>Os08g0515800 Mitochodrial transcription termination factor-related family
           protein
          Length = 333

 Score =  119 bits (299), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/267 (28%), Positives = 141/267 (52%), Gaps = 7/267 (2%)

Query: 1   MDHEEIKNVVRKFPAFAYYNVDRKIKPLVALLLELGVPRSNIPGIIKKRPQLCGISLSDN 60
           ++  +++ VV K P     +VD K+ P V  L  L      +   I K PQ+   S+ + 
Sbjct: 57  IERRKLRYVVTKCPKVLTLSVDDKLVPTVQCLTTLQAKPGEVAQAIVKFPQILFHSVEEK 116

Query: 61  LKPMMTYLENVGINKDKWSKVLSRFPALLTYS-RQKVETTVSFLTELGVPKEN-IGKILT 118
           L P++ + + +GI++ + +K+L   P L++YS   K   TV+FL  LG+ KE  IGKI+ 
Sbjct: 117 LCPLLAFFQTLGISEKQLAKLLMVNPRLISYSIEAKFSQTVNFLVGLGIDKEGMIGKIMA 176

Query: 119 RCPHIMSYSVNDNLRPTAEYFQSI----GADAASLIQKSPQAFGLNIEAKLKPITEFFLE 174
           + P+IM YSV+  LRPTAE+ +S     G++   +I   P     +++  L+P   F   
Sbjct: 177 KEPYIMGYSVDKRLRPTAEFLKSAVGLEGSNLQRVIMSFPDILSRDVDKILRPNLAFLQS 236

Query: 175 RDFTMEEIGTMANRFGIIHTLSMEDNLLPKYEYFL-TMGYPRNELVKFPQYFGYSLEQRI 233
             F+ +++  +   +  +   S++  L P+ ++ +  MG    E+V +PQ+F + L++ +
Sbjct: 237 CGFSKDQVMALVAGYPPVLIKSVKHCLEPRMKFLVEEMGRDMGEVVDYPQFFRHGLKRSL 296

Query: 234 KPRYARMIDCGVRLILNQLLSVSDSRF 260
           + R+  +     R  L+++L  +  +F
Sbjct: 297 EYRHKVLKQMNSRCSLSEMLDCNQKKF 323
>Os03g0785200 Mitochodrial transcription termination factor-related family
           protein
          Length = 310

 Score =  114 bits (284), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 66/215 (30%), Positives = 116/215 (53%), Gaps = 4/215 (1%)

Query: 59  DNLKPMMTYLENVGINKDKWSKVLSRFPALLTYS-RQKVETTVSFLTE-LGVPKENIGKI 116
           +++  ++T+L++ G++     +V    P+LLT S R  +    +FLT+ LG+P     ++
Sbjct: 90  ESIHAVVTFLQSRGLHFKDLGRVFGMCPSLLTASVRADLRPVFAFLTDDLGIPDTAYRRV 149

Query: 117 LTRCPHIMSYSVNDNLRPTAEYFQSIG-ADAASLIQKSPQAFGLNIEAKLKPITEFFLER 175
           + +CP +++ SV D LRP   Y + +G  DA +L  + P     ++E  + P  +F    
Sbjct: 150 VVKCPRVLACSVRDQLRPALLYLRRLGFRDARALAFQDPILLVSSVERTMIPKLDFLAGL 209

Query: 176 DFTMEEIGTMANRFGIIHTLSMEDNLLPKYEYFLT-MGYPRNELVKFPQYFGYSLEQRIK 234
               ++   M  R   + T S+E N  PK+EY +  MG   +++  FPQYF +SL++RI 
Sbjct: 210 GMHRDDAVAMVLRCPALFTFSIERNYKPKFEYLVAEMGGGVHDIKAFPQYFTFSLDKRIA 269

Query: 235 PRYARMIDCGVRLILNQLLSVSDSRFEDILRKRMD 269
           PR+    D GV L L  +L  +D  F ++L K ++
Sbjct: 270 PRHRAAADAGVSLPLPDMLKATDEEFMEMLDKEIE 304
>Os02g0783100 Mitochodrial transcription termination factor-related family
           protein
          Length = 485

 Score =  111 bits (277), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 88/303 (29%), Positives = 138/303 (45%), Gaps = 53/303 (17%)

Query: 10  VRKFPAFAYYNVDRKIKPLVALLLELGVPRSNIPGIIKKRPQLCGISLSDNLKPMMTYLE 69
           VR +PA  + +V   + P+V  L  L V R ++P ++++ P + G+     +   + YL 
Sbjct: 142 VRAYPACLHASVAVDLTPVVKSLRGLDVDRQDLPRVLERYPDILGLKPDGTISTSVAYLV 201

Query: 70  N-VGINKDKWSKVLSRFPALLTYSRQKVETTV----SFLTELGVPKENIGKILTRCPHIM 124
             VG+       +++ FP  L     +V TT+     ++T LG+P   + +IL + P+I+
Sbjct: 202 GIVGVAPRDIGPMVTHFPFFLG---MRVGTTIKPLCEYITSLGLPMRILARILEKRPYIL 258

Query: 125 SYSVNDNLRPTAEYFQSIG---------------------------------------AD 145
            Y + + ++P  E   S G                                        D
Sbjct: 259 GYDLEETVKPNVEALLSFGIRKEMLPLVIAQYPPILGLPLKTKLAAQQYFFNLKLQIDPD 318

Query: 146 A-ASLIQKSPQAFGLNIEAKLKPITEFFLERDFTMEEIGTMANRFGIIHTLSMEDNLLPK 204
           A A  I+K PQ   L+    LK + EF   R  + E++  M  R   I  L ME  L+  
Sbjct: 319 AFACAIEKLPQLVSLHQNIILK-LVEFLRGRGISNEDVARMVVRCPQILLLRME--LMKN 375

Query: 205 YEYFLT--MGYPRNELVKFPQYFGYSLEQRIKPRYARMIDCGVRLILNQLLSVSDSRFED 262
             YF    M  P +EL+ +P+YF YSLE RIKPRY R+   G+R  L+  L+ SD RFE+
Sbjct: 376 SLYFFKSEMKRPISELLDYPEYFTYSLESRIKPRYMRVSTKGIRCSLDWFLNCSDQRFEE 435

Query: 263 ILR 265
            +R
Sbjct: 436 RMR 438
>Os05g0404000 Mitochodrial transcription termination factor-related family
           protein
          Length = 508

 Score =  109 bits (272), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 71/274 (25%), Positives = 135/274 (49%), Gaps = 8/274 (2%)

Query: 4   EEIKNVVRKFPAFAYYNVDRKIKPLVALLLELGVPRSNIPGIIKKRPQLCGISLSDNLKP 63
            ++  V+ ++P    + ++  +   +A L+ +GV R  +  +I + P++ G+ +   +KP
Sbjct: 195 HDVPRVLERYPELLGFKLEGTMSTSIAYLVGIGVARRQVGSVITRFPEVLGMRVGKIIKP 254

Query: 64  MMTYLENVGINKDKWSKVLSRFPALLTYS-RQKVETTVSFLTELGVPKENIGKILTRCPH 122
            + +LE +G+ +   ++++ + P +L +    KV+  +  L E GV KE +  I+ + P 
Sbjct: 255 FVEHLEGIGLQRLAIARIIEKKPYVLGFGLEDKVKPNIEALLEFGVRKEALAFIVAQYPD 314

Query: 123 IMSYSVNDNLRPTAEYFQSI----GADAASLIQKSPQAFGLNIEAKLKPITEFFLERDFT 178
           I+   + D L      F+S       D   +I++ PQA  L   A LK +  F     F 
Sbjct: 315 ILGIELRDKLATQQSLFESSILVSSEDFGRVIERMPQAISLGRTAVLKHVN-FLTSCGFL 373

Query: 179 MEEIGTMANRFGIIHTLSMEDNLLPKYEYFLT-MGYPRNELVKFPQYFGYSLEQRIKPRY 237
           + ++  M      +  L+M D +   +EYF   M     ELV+FP +F Y LE  ++PR+
Sbjct: 374 LSQVSKMVVACPQLLALNM-DIMKMSFEYFQNEMERDLEELVEFPAFFTYGLESTVRPRH 432

Query: 238 ARMIDCGVRLILNQLLSVSDSRFEDILRKRMDGI 271
             +   G    L  LL+ SD++F++ ++    GI
Sbjct: 433 EMVAKKGFTCSLAWLLNCSDAKFDERMKYDTIGI 466

 Score = 92.8 bits (229), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 103/200 (51%), Gaps = 4/200 (2%)

Query: 13  FPAFAYYNVDRKIKPLVALLLELGVPRSNIPGIIKKRPQLCGISLSDNLKPMMTYLENVG 72
           +P     +V + + P++  L +LGV +  +P ++++ PQ+   S+  +L P++ YL+ + 
Sbjct: 132 YPLALGCSVRKNMVPVLDYLGKLGVRQDALPDLLRRYPQVLHASVVVDLAPVVKYLQGMD 191

Query: 73  INKDKWSKVLSRFPALLTYSRQ-KVETTVSFLTELGVPKENIGKILTRCPHIMSYSVNDN 131
           +      +VL R+P LL +  +  + T++++L  +GV +  +G ++TR P ++   V   
Sbjct: 192 VRPHDVPRVLERYPELLGFKLEGTMSTSIAYLVGIGVARRQVGSVITRFPEVLGMRVGKI 251

Query: 132 LRPTAEYFQSIGAD---AASLIQKSPQAFGLNIEAKLKPITEFFLERDFTMEEIGTMANR 188
           ++P  E+ + IG      A +I+K P   G  +E K+KP  E  LE     E +  +  +
Sbjct: 252 IKPFVEHLEGIGLQRLAIARIIEKKPYVLGFGLEDKVKPNIEALLEFGVRKEALAFIVAQ 311

Query: 189 FGIIHTLSMEDNLLPKYEYF 208
           +  I  + + D L  +   F
Sbjct: 312 YPDILGIELRDKLATQQSLF 331
>Os07g0134700 Mitochodrial transcription termination factor-related family
           protein
          Length = 608

 Score =  107 bits (266), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/276 (26%), Positives = 139/276 (50%), Gaps = 9/276 (3%)

Query: 1   MDHEEIKNVVRKFP-AFAYYNVDRKIKPLVALLLELGVPRSNIPGIIKKRPQLCGISLSD 59
           M+  +   +V  +P A  +++++ ++   V  L E G+    +  ++  +PQL   S+ +
Sbjct: 298 MNDNDFGTMVYDYPKALGFFSLE-EMNSKVQYLKEFGLSTDELGKLMAFKPQLMACSIEE 356

Query: 60  NLKPMMTYLENVGINKDKWSKVLSRFPALLTYSRQKV-ETTVSFLTELGVPKENIGKILT 118
             KP++ YL ++ I++D   ++L   P +     + V    V FL ++GV  + +G +L 
Sbjct: 357 RWKPLVKYLYHLNISRDGMKRMLVVQPTIFCLDLETVIAPKVQFLQDIGVRSDAVGGVLV 416

Query: 119 RCPHIMSYSVNDNLRPTAEYFQSIGA----DAASLIQKSPQAFGLNIEAKLKPITEFFLE 174
           + P +++YS+   +RP   +  +  A    D   +I   PQ  G +I  KL+   ++   
Sbjct: 417 KFPPVLTYSLYKKIRPVVIFLMTKAAVKQEDIGKVIALDPQLLGCSIVRKLEVSVKYLRS 476

Query: 175 RDFTMEEIGTMANRFGIIHTLSMEDNLLPKYEYFL-TMGYPRNELVKFPQYFGYSLEQRI 233
                  +G M   F  +   ++ D L PKY+Y    M  P  +LV+FP++F YSLE RI
Sbjct: 477 LGIYHFVLGQMVTDFPTLLRYNV-DVLRPKYQYLRRVMVRPLIDLVEFPRFFSYSLEDRI 535

Query: 234 KPRYARMIDCGVRLILNQLLSVSDSRFEDILRKRMD 269
            PR+  +++  + + L  +L+ SD  F   +R+ ++
Sbjct: 536 VPRHQTLVENRINMKLRYMLTGSDEDFSQRVREAVE 571

 Score = 75.5 bits (184), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 87/184 (47%), Gaps = 7/184 (3%)

Query: 59  DNLKPMMTYLENVGINKDKWSKVLSRFPALLTYSRQKVETTVSFLTELGVPKENIGKILT 118
           + L+ ++ Y+E+ G+ KD    V+ R P LL  S  ++ET V F T++G+   + G ++ 
Sbjct: 249 EELEEIIYYMESCGVRKDWIGHVVGRCPQLLNLSMDELETRVRFYTDMGMNDNDFGTMVY 308

Query: 119 RCPHIMSYSVNDNLRPTAEYFQSIGADA---ASLIQKSPQAFGLNIEAKLKPITEFFLER 175
             P  + +   + +    +Y +  G        L+   PQ    +IE + KP+ ++    
Sbjct: 309 DYPKALGFFSLEEMNSKVQYLKEFGLSTDELGKLMAFKPQLMACSIEERWKPLVKYLYHL 368

Query: 176 DFTMEEIGTMANRFGIIHTLSMEDNLLPKYEYFLTMGYPRNE----LVKFPQYFGYSLEQ 231
           + + + +  M      I  L +E  + PK ++   +G   +     LVKFP    YSL +
Sbjct: 369 NISRDGMKRMLVVQPTIFCLDLETVIAPKVQFLQDIGVRSDAVGGVLVKFPPVLTYSLYK 428

Query: 232 RIKP 235
           +I+P
Sbjct: 429 KIRP 432
>Os07g0583200 Mitochodrial transcription termination factor-related family
           protein
          Length = 503

 Score = 92.8 bits (229), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/241 (29%), Positives = 117/241 (48%), Gaps = 44/241 (18%)

Query: 4   EEIKNVVRKFPAFAYYNVDRKIKPLVALLLELGVPRSNIPGIIKKRPQLCGISLSDNLKP 63
           +++K ++ + P    Y +   +K  VA L+ +GVP + I  II   P     S+  +LKP
Sbjct: 237 KDMKRMLVRQPQILEYTLS-NLKSHVAFLVGIGVPSARIGQIISAAPSFFSYSVEQSLKP 295

Query: 64  MMTYL-ENVGINKDKWSKVLSRFPALLTYSRQKVETTVS----FLT-ELGVPKENIGKIL 117
            + YL E VGI +    KV+   P +L    Q++++       FL+ ELG PK+NI K++
Sbjct: 296 TIRYLIEEVGIEESDVGKVVQLSPQILV---QRIDSAWKSRFLFLSKELGAPKDNIVKMV 352

Query: 118 TRCPHIMSYSVNDNLRPTAEYFQSIGADAASLIQKSPQAFGLNIEAKLKPITEFFLERDF 177
           T+ P ++ YS+ D + P   + +SIG                               RD 
Sbjct: 353 TKHPQLLHYSIEDGILPRINFLRSIGM------------------------------RDT 382

Query: 178 TMEEIGTMANRFGIIHTLSMEDNLLPKYEYFLT-MGYPRNELVKFPQYFGYSLEQRIKPR 236
            + ++ T   +   + +LS+E+NL PKY Y +  +      L K+P Y   SL+QRI+PR
Sbjct: 383 DVLKVLTSLTQ---VLSLSLEENLKPKYLYLVNDLKNDVQSLTKYPMYLSLSLDQRIRPR 439

Query: 237 Y 237
           +
Sbjct: 440 H 440

 Score = 91.7 bits (226), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 119/235 (50%), Gaps = 14/235 (5%)

Query: 19  YNVDRKIKPLVALLLELGVPRSNIPGIIKKRPQLCGISLSDNLKPMMTYLENVGINKDKW 78
           Y+ D K  PL+  L   G+  S+   + ++      IS + + +  + +L +VG+     
Sbjct: 181 YDFDDKWLPLIDYLCTFGLKESHFTNMYERHMACFQISQA-SAEERLEFLLSVGVKSKDM 239

Query: 79  SKVLSRFPALLTYSRQKVETTVSFLTELGVPKENIGKILTRCPHIMSYSVNDNLRPTAEY 138
            ++L R P +L Y+   +++ V+FL  +GVP   IG+I++  P   SYSV  +L+PT  Y
Sbjct: 240 KRMLVRQPQILEYTLSNLKSHVAFLVGIGVPSARIGQIISAAPSFFSYSVEQSLKPTIRY 299

Query: 139 F-QSIG---ADAASLIQKSPQAFGLNIEAKLKPITEF-FLERDFTM--EEIGTMANRFGI 191
             + +G   +D   ++Q SPQ     I++  K  + F FL ++     + I  M  +   
Sbjct: 300 LIEEVGIEESDVGKVVQLSPQILVQRIDSAWK--SRFLFLSKELGAPKDNIVKMVTKHPQ 357

Query: 192 IHTLSMEDNLLPKYEYFLTMGYPRNELVK----FPQYFGYSLEQRIKPRYARMID 242
           +   S+ED +LP+  +  ++G    +++K      Q    SLE+ +KP+Y  +++
Sbjct: 358 LLHYSIEDGILPRINFLRSIGMRDTDVLKVLTSLTQVLSLSLEENLKPKYLYLVN 412

 Score = 67.8 bits (164), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 89/171 (52%), Gaps = 3/171 (1%)

Query: 6   IKNVVRKFPAFAYYNVDRKIKPLVALLLE-LGVPRSNIPGIIKKRPQLCGISLSDNLKPM 64
           I  ++   P+F  Y+V++ +KP +  L+E +G+  S++  +++  PQ+    +    K  
Sbjct: 274 IGQIISAAPSFFSYSVEQSLKPTIRYLIEEVGIEESDVGKVVQLSPQILVQRIDSAWKSR 333

Query: 65  MTYL-ENVGINKDKWSKVLSRFPALLTYS-RQKVETTVSFLTELGVPKENIGKILTRCPH 122
             +L + +G  KD   K++++ P LL YS    +   ++FL  +G+   ++ K+LT    
Sbjct: 334 FLFLSKELGAPKDNIVKMVTKHPQLLHYSIEDGILPRINFLRSIGMRDTDVLKVLTSLTQ 393

Query: 123 IMSYSVNDNLRPTAEYFQSIGADAASLIQKSPQAFGLNIEAKLKPITEFFL 173
           ++S S+ +NL+P   Y  +   +    + K P    L+++ +++P   F +
Sbjct: 394 VLSLSLEENLKPKYLYLVNDLKNDVQSLTKYPMYLSLSLDQRIRPRHRFLV 444
>Os03g0360600 Mitochodrial transcription termination factor-related family
           protein
          Length = 301

 Score = 78.6 bits (192), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 58/199 (29%), Positives = 91/199 (45%), Gaps = 5/199 (2%)

Query: 68  LENVGINKDKWSKVLSRFPALLTYSRQKVETTVSFLT-ELGVPKENIGKILTRCPHIMSY 126
           L   G+      +     P LL+     +   + FLT E GVP E++ ++L R P ++  
Sbjct: 70  LLAAGVPPADLRRAAGMCPELLSVPVGTITAALRFLTDEAGVPAEDLPRVLRRRPRLLVS 129

Query: 127 SVNDNLRPTAEYFQSIGADAASLIQKSPQAFGLNIEAKLKPITEFFLERDFTMEEIGTMA 186
            V   LRPT  + +++G      + +       ++E KL P  EF            +MA
Sbjct: 130 PVAARLRPTLYFLRALGVPD---LPRRADLLSFSVEDKLLPRIEFLESLGLPSRAARSMA 186

Query: 187 NRFGIIHTLSMEDNLLPKYEYFL-TMGYPRNELVKFPQYFGYSLEQRIKPRYARMIDCGV 245
            RF  +    ++ N+ PK EY L  M    ++L +FP+YF Y+L  RI PR+      GV
Sbjct: 187 RRFPALFYYGIDGNMRPKAEYLLGDMARDADDLFEFPEYFSYALATRIAPRHEACAARGV 246

Query: 246 RLILNQLLSVSDSRFEDIL 264
           R+ L  +L   D +F   L
Sbjct: 247 RMPLPAMLRPGDDKFRATL 265
  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.140    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,283,357
Number of extensions: 319628
Number of successful extensions: 780
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 697
Number of HSP's successfully gapped: 17
Length of query: 271
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 172
Effective length of database: 11,866,615
Effective search space: 2041057780
Effective search space used: 2041057780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 155 (64.3 bits)