Os02g0783100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Mitochodrial transcription termination factor-related family protein.
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Os02g0783100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Mitochodrial transcription termination factor-related family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 76.85 | 0.412 | 8.44 | 0.79 | 1.34 | -1.08 | -0.39 | -0.503 | -0.0528 | 17.4 | 29.57 | 101 | -- | -- |
| 77.14 | 0.409 | 8.45 | 0.71 | 1.34 | -1.07 | -0.257 | -- | -0.0705 | 17.4 | 29.68 | 110 | -- | -- |
| 77.16 | 0.409 | 8.44 | 0.76 | 1.34 | -1.08 | -- | -0.318 | -0.0622 | 17.4 | 29.5 | 105 | -- | -- |
| 77.3 | 0.409 | 8.45 | 0.708 | 1.34 | -1.07 | -- | -- | -0.0748 | 17.4 | 29.59 | 109 | -- | -- |
| 148.46 | 0.567 | 8.45 | 0.5 | -- | -2.41 | -- | -0.471 | -0.204 | -- | 81.25 | 194 | -- | -- |
| 92.49 | 0.451 | 8.4 | 0.973 | 1.64 | -- | -0.144 | -- | 0.139 | 16.9 | -- | -- | -- | -- |
| 92.54 | 0.45 | 8.4 | 0.973 | 1.64 | -- | -- | -- | 0.138 | 16.9 | -- | -- | -- | -- |
| 147.07 | 0.565 | 8.47 | 0.408 | -- | -2.22 | -- | -- | -0.276 | -- | 31.3 | 204 | -- | -- |
| 89.05 | 0.44 | 8.48 | -- | 1.26 | -1.37 | -- | -- | -0.209 | 17.6 | 29.5 | 105 | -- | -- |
| 234.22 | 0.715 | 8.38 | 0.913 | -- | -- | -- | -- | 0.0959 | -- | -- | -- | -- | -- |
| 117.48 | 0.507 | 8.42 | -- | 1.62 | -- | -- | -- | 0.0298 | 17 | -- | -- | -- | -- |
| 151.12 | 0.573 | 8.48 | -- | -- | -2.34 | -- | -- | -0.345 | -- | 31.09 | 206 | -- | -- |
| 256.19 | 0.747 | 8.41 | -- | -- | -- | -- | -- | -0.00531 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 67.23 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 2 | 67.40 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 18 |
| 3 | 67.52 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 14 |
| 8 | 68.56 | temperature | 30 | 90 | < th | dose dependent | sin | 5 | NA |
| 9 | 68.56 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 14 |
| 14 | 68.84 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 14 |
| 17 | 69.06 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 20 |
| 23 | 69.46 | temperature | 15 | 90 | > th | dose dependent | sin | 5 | NA |
| 24 | 69.46 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 22 |
| 37 | 69.67 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 12 |
| 58 | 70.20 | temperature | 20 | 270 | > th | dose independent | rect. | 5 | 21 |
| 75 | 70.49 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 10 |
| 83 | 70.66 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 8 |
| 94 | 70.89 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 19 |
| 154 | 71.56 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 8 |
| 228 | 72.41 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 343 | 73.23 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 9 |
| 444 | 73.94 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 15 |
| 451 | 73.99 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 6 |
| 506 | 74.27 | temperature | 20 | 270 | < th | dose independent | rect. | 24 | 20 |
| 543 | 74.49 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 18 |
| 544 | 74.49 | temperature | 25 | 90 | < th | dose independent | rect. | 3 | 18 |
| 649 | 75.10 | temperature | 25 | 90 | < th | dose independent | rect. | 3 | 20 |
| 741 | 75.42 | temperature | 20 | 270 | < th | dose independent | rect. | 24 | 6 |
| 752 | 75.45 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 8 |
| 771 | 75.51 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 3 | 5 |
| 773 | 75.52 | temperature | 25 | 270 | < th | dose independent | sin | 7 | NA |
| 842 | 75.81 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 871 | 75.90 | temperature | 20 | 270 | < th | dose dependent | rect. | 24 | 6 |
| 883 | 75.93 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 9 |
| 908 | 76.00 | temperature | 20 | 270 | < th | dose independent | rect. | 24 | 11 |
| 910 | 76.00 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 911 | 76.01 | temperature | 20 | 270 | < th | dose independent | rect. | 1 | 4 |
| 971 | 76.18 | temperature | 20 | 270 | > th | dose independent | sin | 7 | NA |