Os03g0785200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Mitochodrial transcription termination factor-related family protein.
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Os03g0785200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Mitochodrial transcription termination factor-related family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 141.79 | 0.559 | 12.2 | 0.271 | 2.61 | 0.755 | -1.44 | 3.58 | -0.0922 | 14.8 | 20.9 | 837 | -- | -- |
| 173.28 | 0.613 | 12.3 | -0.43 | 2.24 | 0.59 | -2.5 | -- | -0.249 | 14.3 | 27.5 | 330 | -- | -- |
| 148.56 | 0.568 | 12.2 | 0.316 | 2.61 | 0.75 | -- | 3.88 | -0.0793 | 14.8 | 20.84 | 844 | -- | -- |
| 189.52 | 0.641 | 12.3 | -0.47 | 2.31 | 0.47 | -- | -- | -0.212 | 14.8 | 28.2 | 270 | -- | -- |
| 534.12 | 1.08 | 12.2 | 0.258 | -- | 0.692 | -- | 3.81 | -0.142 | -- | 21 | 585 | -- | -- |
| 183.94 | 0.636 | 12.3 | -0.319 | 2.59 | -- | -1.97 | -- | -0.151 | 14.8 | -- | -- | -- | -- |
| 196.69 | 0.657 | 12.3 | -0.365 | 2.59 | -- | -- | -- | -0.161 | 15 | -- | -- | -- | -- |
| 377.72 | 0.905 | 12.3 | -0.906 | -- | 1.59 | -- | -- | -0.517 | -- | 26.7 | 148 | -- | -- |
| 194.99 | 0.65 | 12.3 | -- | 2.37 | 0.409 | -- | -- | -0.162 | 14.8 | 28.29 | 270 | -- | -- |
| 583.65 | 1.13 | 12.3 | -0.475 | -- | -- | -- | -- | -0.228 | -- | -- | -- | -- | -- |
| 200.2 | 0.662 | 12.3 | -- | 2.6 | -- | -- | -- | -0.121 | 15 | -- | -- | -- | -- |
| 397.72 | 0.929 | 12.3 | -- | -- | 1.52 | -- | -- | -0.417 | -- | 26.71 | 148 | -- | -- |
| 589.61 | 1.13 | 12.3 | -- | -- | -- | -- | -- | -0.176 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 133.07 | temperature | 20.0 | 720 | > th | dose independent | rect. | 3 | 20 |
| 4 | 134.26 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 19 | 8 |
| 13 | 135.92 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 20 | 7 |
| 17 | 136.24 | temperature | 20.0 | 720 | > th | dose independent | rect. | 12 | 14 |
| 21 | 136.43 | temperature | 20.0 | 720 | > th | dose independent | sin | 17 | NA |
| 34 | 137.39 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 23 | 8 |
| 39 | 137.70 | temperature | 20.0 | 720 | > th | dose independent | rect. | 13 | 11 |
| 53 | 138.32 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 15 | 9 |
| 71 | 139.28 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 14 | 11 |
| 77 | 139.59 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 13 | 13 |
| 95 | 140.10 | temperature | 20.0 | 720 | < th | dose independent | rect. | 12 | 18 |
| 103 | 140.19 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 12 | 15 |
| 114 | 140.49 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 16 | 13 |
| 136 | 140.92 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 15 | 15 |
| 144 | 141.00 | temperature | 15.0 | 90 | > th | dose independent | rect. | 19 | 8 |
| 145 | 141.06 | temperature | 10.0 | 720 | > th | dose dependent | sin | 17 | NA |
| 152 | 141.20 | temperature | 20.0 | 720 | > th | dose independent | rect. | 3 | 14 |
| 168 | 141.48 | temperature | 30.0 | 720 | < th | dose dependent | sin | 13 | NA |
| 195 | 141.77 | wind | 9.0 | 90 | < th | dose independent | rect. | 3 | 16 |
| 218 | 142.03 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 24 | 5 |
| 227 | 142.14 | temperature | 20.0 | 720 | > th | dose independent | sin | 2 | NA |
| 228 | 142.14 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 19 | 8 |
| 237 | 142.20 | temperature | 15.0 | 10 | > th | dose independent | rect. | 20 | 7 |
| 261 | 142.52 | humidity | 90.0 | 720 | < th | dose independent | rect. | 15 | 6 |
| 279 | 142.67 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 17 | 9 |
| 287 | 142.74 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 1 | 2 |
| 306 | 142.86 | temperature | 20.0 | 720 | > th | dose independent | rect. | 4 | 11 |
| 317 | 142.92 | temperature | 10.0 | 270 | > th | dose dependent | sin | 13 | NA |
| 334 | 143.14 | temperature | 15.0 | 90 | > th | dose independent | rect. | 3 | 16 |
| 358 | 143.35 | temperature | 30.0 | 270 | < th | dose dependent | sin | 10 | NA |
| 457 | 144.13 | temperature | 15.0 | 270 | > th | dose independent | rect. | 17 | 8 |
| 467 | 144.23 | temperature | 20.0 | 720 | < th | dose independent | sin | 13 | NA |
| 468 | 144.23 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 3 | 16 |
| 470 | 144.23 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 479 | 144.28 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 19 | 8 |
| 480 | 144.28 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 19 | 8 |
| 495 | 144.40 | radiation | 10.0 | 270 | < th | dose independent | rect. | 15 | 11 |
| 512 | 144.49 | temperature | 30.0 | 90 | < th | dose independent | rect. | 19 | 8 |
| 513 | 144.49 | humidity | 50.0 | 90 | > th | dose independent | rect. | 19 | 8 |
| 516 | 144.49 | radiation | 1.0 | 90 | < th | dose independent | rect. | 19 | 8 |
| 522 | 144.49 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 3 | 16 |
| 524 | 144.49 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 19 | 8 |
| 553 | 144.61 | wind | 9.0 | 90 | < th | dose independent | rect. | 19 | 8 |
| 600 | 144.87 | wind | 9.0 | 10 | < th | dose independent | rect. | 3 | 17 |
| 610 | 144.93 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 3 | 16 |
| 611 | 144.93 | temperature | 20.0 | 720 | < th | dose independent | rect. | 2 | 21 |
| 634 | 145.02 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 21 | 7 |
| 654 | 145.13 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 3 | 17 |
| 697 | 145.38 | temperature | 20.0 | 270 | > th | dose independent | sin | 14 | NA |
| 805 | 145.91 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 8 | 18 |
| 814 | 145.99 | temperature | 20.0 | 720 | > th | dose independent | no | NA | NA |
| 845 | 146.13 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 3 | 17 |
| 848 | 146.13 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 3 | 17 |
| 851 | 146.14 | temperature | 20.0 | 720 | > th | dose independent | rect. | 21 | 23 |
| 858 | 146.16 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 20 | 7 |
| 866 | 146.19 | radiation | 10.0 | 270 | < th | dose independent | sin | 15 | NA |
| 879 | 146.26 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 20 | 7 |
| 880 | 146.26 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 20 | 7 |
| 891 | 146.33 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 17 | 9 |
| 906 | 146.36 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 22 | 20 |
| 920 | 146.39 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 17 | 9 |
| 921 | 146.39 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 17 | 9 |
| 928 | 146.43 | temperature | 20.0 | 720 | < th | dose independent | no | NA | NA |
| 932 | 146.44 | humidity | 50.0 | 270 | > th | dose independent | rect. | 17 | 9 |
| 933 | 146.44 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 15 | 11 |
| 950 | 146.50 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 4 | 20 |