BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0785200 Os03g0785200|J023002I24
(310 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0785200 Mitochodrial transcription termination factor-... 523 e-149
Os03g0360600 Mitochodrial transcription termination factor-... 126 2e-29
Os02g0577501 Mitochodrial transcription termination factor-... 115 6e-26
Os02g0602400 Mitochodrial transcription termination factor-... 114 1e-25
Os07g0583200 Mitochodrial transcription termination factor-... 109 3e-24
Os07g0134700 Mitochodrial transcription termination factor-... 87 1e-17
Os08g0515800 Mitochodrial transcription termination factor-... 84 2e-16
Os02g0783100 Mitochodrial transcription termination factor-... 77 2e-14
>Os03g0785200 Mitochodrial transcription termination factor-related family
protein
Length = 310
Score = 523 bits (1348), Expect = e-149, Method: Compositional matrix adjust.
Identities = 266/310 (85%), Positives = 266/310 (85%)
Query: 1 MPLCSFYASTSLPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRV 60
MPLCSFYASTSLPV RV
Sbjct: 1 MPLCSFYASTSLPVAKPHSLPSSSSSKPYTATPAPAPTAASASASAAALSLHLPELPSRV 60
Query: 61 KDKILSLELMGVDYGRALALNPALRDAAPESIHAVVTFLQSRGLHFKDLGRVFGMCPSLL 120
KDKILSLELMGVDYGRALALNPALRDAAPESIHAVVTFLQSRGLHFKDLGRVFGMCPSLL
Sbjct: 61 KDKILSLELMGVDYGRALALNPALRDAAPESIHAVVTFLQSRGLHFKDLGRVFGMCPSLL 120
Query: 121 TASVRADLRPVFAFLTDDLGIPDTAYRRVVVKCPRVLACSVRDQLRPALLYLRRLGFRDA 180
TASVRADLRPVFAFLTDDLGIPDTAYRRVVVKCPRVLACSVRDQLRPALLYLRRLGFRDA
Sbjct: 121 TASVRADLRPVFAFLTDDLGIPDTAYRRVVVKCPRVLACSVRDQLRPALLYLRRLGFRDA 180
Query: 181 RALAFQDPILLVSSVERTMIPKLDFLAGLGMHRDDAVAMVLRCPALFTFSIERNYKPKFE 240
RALAFQDPILLVSSVERTMIPKLDFLAGLGMHRDDAVAMVLRCPALFTFSIERNYKPKFE
Sbjct: 181 RALAFQDPILLVSSVERTMIPKLDFLAGLGMHRDDAVAMVLRCPALFTFSIERNYKPKFE 240
Query: 241 YLVAEMGGGVHDIKAFPQYFTFSLDKRIAPRHRAAADAGVSLPLPDMLKATDEEFMEMLD 300
YLVAEMGGGVHDIKAFPQYFTFSLDKRIAPRHRAAADAGVSLPLPDMLKATDEEFMEMLD
Sbjct: 241 YLVAEMGGGVHDIKAFPQYFTFSLDKRIAPRHRAAADAGVSLPLPDMLKATDEEFMEMLD 300
Query: 301 KEIELQKQAA 310
KEIELQKQAA
Sbjct: 301 KEIELQKQAA 310
>Os03g0360600 Mitochodrial transcription termination factor-related family
protein
Length = 301
Score = 126 bits (317), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 84/212 (39%), Positives = 117/212 (55%), Gaps = 5/212 (2%)
Query: 88 APESIHAVVTFLQSRGLHFKDLGRVFGMCPSLLTASVRADLRPVFAFLTDDLGIPDTAYR 147
+P L + G+ DL R GMCP LL+ V + FLTD+ G+P
Sbjct: 59 SPSVAAGAAEVLLAAGVPPADLRRAAGMCPELLSVPV-GTITAALRFLTDEAGVPAEDLP 117
Query: 148 RVVVKCPRVLACSVRDQLRPALLYLRRLGFRDARALAFQDPILLVSSVERTMIPKLDFLA 207
RV+ + PR+L V +LRP L +LR LG D A LL SVE ++P+++FL
Sbjct: 118 RVLRRRPRLLVSPVAARLRPTLYFLRALGVPDLPRRA----DLLSFSVEDKLLPRIEFLE 173
Query: 208 GLGMHRDDAVAMVLRCPALFTFSIERNYKPKFEYLVAEMGGGVHDIKAFPQYFTFSLDKR 267
LG+ A +M R PALF + I+ N +PK EYL+ +M D+ FP+YF+++L R
Sbjct: 174 SLGLPSRAARSMARRFPALFYYGIDGNMRPKAEYLLGDMARDADDLFEFPEYFSYALATR 233
Query: 268 IAPRHRAAADAGVSLPLPDMLKATDEEFMEML 299
IAPRH A A GV +PLP ML+ D++F L
Sbjct: 234 IAPRHEACAARGVRMPLPAMLRPGDDKFRATL 265
>Os02g0577501 Mitochodrial transcription termination factor-related family
protein
Length = 282
Score = 115 bits (287), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 101/243 (41%), Positives = 128/243 (52%), Gaps = 7/243 (2%)
Query: 59 RVKDKILSLELMGVDYGRALALNPALRDAAPESIHAVVTFLQSRGLHFKDLGRVFGMCPS 118
R K LS EL +D LAL+P LR A + A + L S GL D RVF PS
Sbjct: 36 RRKLYFLSSEL-HLDPFPLLALHPPLRAAPLPQLRASLALLLSHGLSAGDAARVFSAFPS 94
Query: 119 LLTASVRADLRPVFAFLTDDLGIPDTAYRRVVVKCPRVLACSVRDQLRPALLYLRRLGFR 178
LLT+ LR FL+ D +P R VV+ PR+LA SV LRPAL +LRR
Sbjct: 95 LLTSPPGEHLR----FLSADAPLPPPLLRAAVVRSPRLLAASVPGTLRPALRFLRRRVAL 150
Query: 179 DARALAFQDPILLVSSVERTMIPKLDFLAGLGMHRDDAVAMVL-RCPALFTFSIERNYKP 237
R L +LL SV+RT++PKL FL D AV +L R PA+ ++ I+ N P
Sbjct: 151 RRRPLPLAAALLLAFSVDRTLLPKLLFLRDATGMPDPAVCAILRRAPAILSYGIQTNLTP 210
Query: 238 KFEYLVAEMG-GGVHDIKAFPQYFTFSLDKRIAPRHRAAADAGVSLPLPDMLKATDEEFM 296
K +L MG ++ FP YF FSL+ RI PRH A + V + L DML +D+EF
Sbjct: 211 KLRFLADRMGRDPAVELAEFPHYFAFSLEGRIRPRHEALKERRVQMSLKDMLTISDDEFR 270
Query: 297 EML 299
E L
Sbjct: 271 ERL 273
>Os02g0602400 Mitochodrial transcription termination factor-related family
protein
Length = 271
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 116/215 (53%), Gaps = 4/215 (1%)
Query: 90 ESIHAVVTFLQSRGLHFKDLGRVFGMCPSLLTASVRADLRPVFAFLTDDLGIPDTAYRRV 149
+++ ++T+L++ G++ +V P+LLT S R + +FLT+ LG+P ++
Sbjct: 59 DNLKPMMTYLENVGINKDKWSKVLSRFPALLTYS-RQKVETTVSFLTE-LGVPKENIGKI 116
Query: 150 VVKCPRVLACSVRDQLRPALLYLRRLGFRDARALAFQDPILLVSSVERTMIPKLDFLAGL 209
+ +CP +++ SV D LRP Y + +G DA +L + P ++E + P +F
Sbjct: 117 LTRCPHIMSYSVNDNLRPTAEYFQSIG-ADAASLIQKSPQAFGLNIEAKLKPITEFFLER 175
Query: 210 GMHRDDAVAMVLRCPALFTFSIERNYKPKFEYLVAEMGGGVHDIKAFPQYFTFSLDKRIA 269
++ M R + T S+E N PK+EY + MG +++ FPQYF +SL++RI
Sbjct: 176 DFTMEEIGTMANRFGIIHTLSMEDNLLPKYEYFLT-MGYPRNELVKFPQYFGYSLEQRIK 234
Query: 270 PRHRAAADAGVSLPLPDMLKATDEEFMEMLDKEIE 304
PR+ D GV L L +L +D F ++L K ++
Sbjct: 235 PRYARMIDCGVRLILNQLLSVSDSRFEDILRKRMD 269
>Os07g0583200 Mitochodrial transcription termination factor-related family
protein
Length = 503
Score = 109 bits (272), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 110/213 (51%), Gaps = 3/213 (1%)
Query: 64 ILSLELMGVDYGRALALNPALRDAAPESIHAVVTFLQSRGLHFKDLGRVFGMCPSLLTAS 123
+LS+ + D R L P + + ++ + V FL G+ +G++ PS + S
Sbjct: 229 LLSVGVKSKDMKRMLVRQPQILEYTLSNLKSHVAFLVGIGVPSARIGQIISAAPSFFSYS 288
Query: 124 VRADLRPVFAFLTDDLGIPDTAYRRVVVKCPRVLACSVRDQLRPALLYL-RRLGF--RDA 180
V L+P +L +++GI ++ +VV P++L + + L+L + LG +
Sbjct: 289 VEQSLKPTIRYLIEEVGIEESDVGKVVQLSPQILVQRIDSAWKSRFLFLSKELGAPKDNI 348
Query: 181 RALAFQDPILLVSSVERTMIPKLDFLAGLGMHRDDAVAMVLRCPALFTFSIERNYKPKFE 240
+ + P LL S+E ++P+++FL +GM D + ++ + + S+E N KPK+
Sbjct: 349 VKMVTKHPQLLHYSIEDGILPRINFLRSIGMRDTDVLKVLTSLTQVLSLSLEENLKPKYL 408
Query: 241 YLVAEMGGGVHDIKAFPQYFTFSLDKRIAPRHR 273
YLV ++ V + +P Y + SLD+RI PRHR
Sbjct: 409 YLVNDLKNDVQSLTKYPMYLSLSLDQRIRPRHR 441
>Os07g0134700 Mitochodrial transcription termination factor-related family
protein
Length = 608
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/273 (24%), Positives = 124/273 (45%), Gaps = 45/273 (16%)
Query: 70 MGVDYGRALALNPALRDAAPESIHAVVTFLQSRGLHFKDLGRVFGMCPSLLTASVRADLR 129
M DY +AL + E +++ V +L+ GL +LG++ P L+ S+ +
Sbjct: 306 MVYDYPKALGF------FSLEEMNSKVQYLKEFGLSTDELGKLMAFKPQLMACSIEERWK 359
Query: 130 PVFAFLT-----------------------------------DDLGIPDTAYRRVVVKCP 154
P+ +L D+G+ A V+VK P
Sbjct: 360 PLVKYLYHLNISRDGMKRMLVVQPTIFCLDLETVIAPKVQFLQDIGVRSDAVGGVLVKFP 419
Query: 155 RVLACSVRDQLRPALLYLRR---LGFRDARALAFQDPILLVSSVERTMIPKLDFLAGLGM 211
VL S+ ++RP +++L + D + DP LL S+ R + + +L LG+
Sbjct: 420 PVLTYSLYKKIRPVVIFLMTKAAVKQEDIGKVIALDPQLLGCSIVRKLEVSVKYLRSLGI 479
Query: 212 HRDDAVAMVLRCPALFTFSIERNYKPKFEYLVAEMGGGVHDIKAFPQYFTFSLDKRIAPR 271
+ MV P L ++++ +PK++YL M + D+ FP++F++SL+ RI PR
Sbjct: 480 YHFVLGQMVTDFPTLLRYNVD-VLRPKYQYLRRVMVRPLIDLVEFPRFFSYSLEDRIVPR 538
Query: 272 HRAAADAGVSLPLPDMLKATDEEFMEMLDKEIE 304
H+ + +++ L ML +DE+F + + + +E
Sbjct: 539 HQTLVENRINMKLRYMLTGSDEDFSQRVREAVE 571
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 100/213 (46%), Gaps = 13/213 (6%)
Query: 66 SLELMGVDYGRALALNPALRDAAPESIHAVVTFLQSRGLHFKDLGRVFGMCPSLLTASVR 125
S+ + G GR LA + E + ++ +++S G+ +G V G CP LL S+
Sbjct: 225 SIHVKGEYLGRVLAKGDTFLSRSFEELEEIIYYMESCGVRKDWIGHVVGRCPQLLNLSM- 283
Query: 126 ADLRPVFAFLTDDLGIPDTAYRRVVVKCPRVLACSVRDQLRPALLYLRRLGFRD---ARA 182
+L F T D+G+ D + +V P+ L +++ + YL+ G +
Sbjct: 284 DELETRVRFYT-DMGMNDNDFGTMVYDYPKALGFFSLEEMNSKVQYLKEFGLSTDELGKL 342
Query: 183 LAFQDPILLVSSVERTMIPKLDFLAGLGMHRDDAVAMVLRCPALFTFSIERNYKPKFEYL 242
+AF+ P L+ S+E P + +L L + RD M++ P +F +E PK ++L
Sbjct: 343 MAFK-PQLMACSIEERWKPLVKYLYHLNISRDGMKRMLVVQPTIFCLDLETVIAPKVQFL 401
Query: 243 V-----AEMGGGVHDIKAFPQYFTFSLDKRIAP 270
++ GGV + FP T+SL K+I P
Sbjct: 402 QDIGVRSDAVGGV--LVKFPPVLTYSLYKKIRP 432
>Os08g0515800 Mitochodrial transcription termination factor-related family
protein
Length = 333
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 102/213 (47%), Gaps = 5/213 (2%)
Query: 87 AAPESIHAVVTFLQSRGLHFKDLGRVFGMCPSLLTASVRADLRPVFAFLTDDLGI-PDTA 145
+ E + ++ F Q+ G+ K L ++ + P L++ S+ A FL LGI +
Sbjct: 112 SVEEKLCPLLAFFQTLGISEKQLAKLLMVNPRLISYSIEAKFSQTVNFLVG-LGIDKEGM 170
Query: 146 YRRVVVKCPRVLACSVRDQLRPALLYLRR---LGFRDARALAFQDPILLVSSVERTMIPK 202
+++ K P ++ SV +LRP +L+ L + + + P +L V++ + P
Sbjct: 171 IGKIMAKEPYIMGYSVDKRLRPTAEFLKSAVGLEGSNLQRVIMSFPDILSRDVDKILRPN 230
Query: 203 LDFLAGLGMHRDDAVAMVLRCPALFTFSIERNYKPKFEYLVAEMGGGVHDIKAFPQYFTF 262
L FL G +D +A+V P + S++ +P+ ++LV EMG + ++ +PQ+F
Sbjct: 231 LAFLQSCGFSKDQVMALVAGYPPVLIKSVKHCLEPRMKFLVEEMGRDMGEVVDYPQFFRH 290
Query: 263 SLDKRIAPRHRAAADAGVSLPLPDMLKATDEEF 295
L + + RH+ L +ML ++F
Sbjct: 291 GLKRSLEYRHKVLKQMNSRCSLSEMLDCNQKKF 323
>Os02g0783100 Mitochodrial transcription termination factor-related family
protein
Length = 485
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 101/211 (47%), Gaps = 8/211 (3%)
Query: 91 SIHAVVTFLQSRGLHFKDLGRVFGMCPSLLTASVRADLRP-VFAFLTDDLGIPDTAYRRV 149
+I + ++ S GL + L R+ P +L + ++P V A L+ GI V
Sbjct: 229 TIKPLCEYITSLGLPMRILARILEKRPYILGYDLEETVKPNVEALLS--FGIRKEMLPLV 286
Query: 150 VVKCPRVLACSVRDQLRPALLYLRRLGFR---DARALAFQDPILLVSSVERTMIPKLDFL 206
+ + P +L ++ +L A Y L + DA A A + LVS + ++ ++FL
Sbjct: 287 IAQYPPILGLPLKTKL-AAQQYFFNLKLQIDPDAFACAIEKLPQLVSLHQNIILKLVEFL 345
Query: 207 AGLGMHRDDAVAMVLRCPALFTFSIERNYKPKFEYLVAEMGGGVHDIKAFPQYFTFSLDK 266
G G+ +D MV+RCP + +E K + +EM + ++ +P+YFT+SL+
Sbjct: 346 RGRGISNEDVARMVVRCPQILLLRMEL-MKNSLYFFKSEMKRPISELLDYPEYFTYSLES 404
Query: 267 RIAPRHRAAADAGVSLPLPDMLKATDEEFME 297
RI PR+ + G+ L L +D+ F E
Sbjct: 405 RIKPRYMRVSTKGIRCSLDWFLNCSDQRFEE 435
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.327 0.141 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,513,005
Number of extensions: 331768
Number of successful extensions: 1023
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 978
Number of HSP's successfully gapped: 9
Length of query: 310
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 209
Effective length of database: 11,762,187
Effective search space: 2458297083
Effective search space used: 2458297083
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 156 (64.7 bits)