Os02g0602400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Mitochodrial transcription termination factor-related family protein.
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Os02g0602400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Mitochodrial transcription termination factor-related family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33.12 | 0.27 | 12.9 | 0.232 | 0.591 | 0.642 | -0.744 | 0.181 | 0.0285 | 19.8 | 0.66 | 33 | -- | -- |
| 33.23 | 0.268 | 12.9 | 0.242 | 0.577 | 0.669 | -0.607 | -- | 0.0307 | 19.6 | 0.66 | 33 | -- | -- |
| 33.7 | 0.27 | 12.9 | 0.253 | 0.571 | 0.714 | -- | -0.0784 | 0.0343 | 19.3 | 0.4763 | 44 | -- | -- |
| 33.26 | 0.269 | 12.9 | 0.257 | 0.604 | 0.748 | -- | -- | 0.0458 | 19.1 | 0.4097 | 57 | -- | -- |
| 47.26 | 0.322 | 12.9 | 0.255 | -- | 0.844 | -- | -0.25 | 0.0315 | -- | 0.5695 | 34 | -- | -- |
| 42.32 | 0.305 | 12.9 | 0.188 | 1.17 | -- | -0.279 | -- | 0.0168 | 22.1 | -- | -- | -- | -- |
| 42.62 | 0.306 | 12.9 | 0.198 | 1.17 | -- | -- | -- | 0.0173 | 22.1 | -- | -- | -- | -- |
| 45.89 | 0.317 | 12.9 | 0.222 | -- | 0.86 | -- | -- | 0.0485 | -- | 3.069 | 11 | -- | -- |
| 34.99 | 0.275 | 12.9 | -- | 0.613 | 0.734 | -- | -- | 0.0266 | 19.2 | 0.441 | 61 | -- | -- |
| 125.37 | 0.523 | 12.9 | 0.215 | -- | -- | -- | -- | 0.0192 | -- | -- | -- | -- | -- |
| 43.66 | 0.309 | 13 | -- | 1.17 | -- | -- | -- | -0.00484 | 22.2 | -- | -- | -- | -- |
| 47.2 | 0.321 | 12.9 | -- | -- | 0.86 | -- | -- | 0.0238 | -- | 3.069 | 11 | -- | -- |
| 126.58 | 0.525 | 12.9 | -- | -- | -- | -- | -- | -0.00459 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.62 | radiation | 10.0 | 10 | < th | dose dependent | sin | 10 | NA |
| 6 | 25.75 | radiation | 1.0 | 30 | < th | dose independent | sin | 10 | NA |
| 11 | 26.00 | radiation | 1.0 | 30 | > th | dose independent | sin | 10 | NA |
| 18 | 26.40 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 5 | 3 |
| 31 | 26.88 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 21 | 8 |
| 32 | 26.92 | wind | 5.0 | 30 | < th | dose independent | rect. | 5 | 3 |
| 35 | 27.02 | wind | 5.0 | 90 | < th | dose dependent | rect. | 5 | 2 |
| 37 | 27.03 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 22 | 7 |
| 39 | 27.05 | wind | 9.0 | 90 | < th | dose dependent | rect. | 5 | 3 |
| 40 | 27.06 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 18 | 13 |
| 44 | 27.11 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 4 | 3 |
| 64 | 27.29 | wind | 9.0 | 90 | < th | dose independent | rect. | 8 | 21 |
| 66 | 27.31 | radiation | 1.0 | 90 | > th | dose independent | rect. | 18 | 14 |
| 67 | 27.32 | wind | 5.0 | 270 | < th | dose independent | rect. | 5 | 1 |
| 68 | 27.34 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 5 | 3 |
| 69 | 27.34 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 5 | 3 |
| 72 | 27.35 | radiation | 1.0 | 30 | > th | dose independent | rect. | 5 | 3 |
| 94 | 27.36 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 5 | 1 |
| 102 | 27.42 | temperature | 10.0 | 90 | > th | dose independent | rect. | 5 | 3 |
| 104 | 27.42 | temperature | 30.0 | 90 | < th | dose independent | rect. | 5 | 3 |
| 105 | 27.42 | humidity | 50.0 | 90 | > th | dose independent | rect. | 5 | 3 |
| 107 | 27.42 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 5 | 3 |
| 108 | 27.42 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 5 | 3 |
| 109 | 27.42 | temperature | 10.0 | 90 | > th | dose independent | rect. | 8 | 21 |
| 112 | 27.44 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 8 | 21 |
| 137 | 27.51 | radiation | 40.0 | 90 | < th | dose independent | rect. | 5 | 3 |
| 144 | 27.55 | wind | 5.0 | 270 | < th | dose independent | rect. | 3 | 4 |
| 216 | 27.77 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 4 |
| 218 | 27.77 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 4 |
| 219 | 27.78 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 8 | 21 |
| 220 | 27.78 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 8 | 21 |
| 227 | 27.85 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 5 | 3 |
| 230 | 27.88 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 8 | 21 |
| 238 | 27.95 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 3 | 4 |
| 298 | 28.08 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 4 |
| 300 | 28.08 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 4 |
| 301 | 28.08 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 4 |
| 303 | 28.08 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 4 |
| 304 | 28.08 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 4 |
| 305 | 28.08 | radiation | 40.0 | 270 | < th | dose independent | rect. | 3 | 4 |
| 342 | 28.23 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 5 | 1 |
| 373 | 28.36 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 5 | 4 |
| 386 | 28.41 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 5 | 2 |
| 391 | 28.43 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 3 | 4 |
| 406 | 28.46 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 5 | 4 |
| 429 | 28.61 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 4 |
| 434 | 28.65 | humidity | 50.0 | 30 | > th | dose independent | rect. | 8 | 21 |
| 440 | 28.67 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 4 |
| 498 | 28.88 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 8 | 21 |
| 528 | 29.13 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 3 | 4 |
| 572 | 29.36 | wind | 1.0 | 30 | > th | dose independent | rect. | 5 | 3 |
| 575 | 29.37 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 2 |
| 596 | 29.50 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 22 | 4 |
| 602 | 29.53 | wind | 1.0 | 90 | > th | dose independent | rect. | 9 | 20 |
| 667 | 29.76 | temperature | 20.0 | 10 | > th | dose independent | rect. | 22 | 7 |
| 670 | 29.78 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 21 | 8 |
| 677 | 29.80 | wind | 1.0 | 270 | > th | dose independent | rect. | 5 | 1 |
| 679 | 29.80 | radiation | 1.0 | 90 | < th | dose independent | rect. | 21 | 8 |
| 681 | 29.80 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 5 | 16 |
| 682 | 29.80 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 5 | 16 |
| 684 | 29.81 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 21 | 8 |
| 694 | 29.86 | wind | 9.0 | 90 | < th | dose independent | rect. | 21 | 8 |
| 703 | 29.88 | temperature | 10.0 | 90 | > th | dose independent | rect. | 21 | 8 |
| 704 | 29.88 | temperature | 30.0 | 90 | < th | dose independent | rect. | 21 | 8 |
| 705 | 29.88 | humidity | 50.0 | 90 | > th | dose independent | rect. | 21 | 8 |
| 708 | 29.88 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 21 | 8 |
| 712 | 29.88 | temperature | 10.0 | 90 | > th | dose independent | rect. | 5 | 16 |
| 713 | 29.88 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 5 | 16 |
| 759 | 30.04 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 5 | 2 |
| 770 | 30.05 | wind | 1.0 | 270 | > th | dose independent | rect. | 3 | 4 |
| 814 | 30.18 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 21 | 16 |
| 818 | 30.20 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 21 | 8 |
| 819 | 30.20 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 21 | 8 |
| 820 | 30.20 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 21 | 10 |
| 891 | 30.38 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 18 | 11 |
| 893 | 30.39 | wind | 9.0 | 30 | < th | dose dependent | rect. | 21 | 8 |
| 896 | 30.41 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 5 | 2 |
| 920 | 30.44 | radiation | 1.0 | 10 | < th | dose independent | rect. | 22 | 8 |
| 925 | 30.45 | wind | 9.0 | 90 | < th | dose independent | rect. | 5 | 16 |
| 931 | 30.46 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 21 | 22 |
| 938 | 30.47 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 21 | 8 |
| 970 | 30.56 | radiation | 1.0 | 90 | < th | dose independent | rect. | 21 | 10 |