Os05g0404000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Mitochodrial transcription termination factor-related family protein.
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Os05g0404000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Mitochodrial transcription termination factor-related family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 59.13 | 0.361 | 9.9 | 0.886 | 1.11 | 0.801 | 0.0229 | -2.52 | -0.478 | 15.8 | 19.32 | 1659 | -- | -- |
| 62.39 | 0.368 | 9.95 | 0.888 | 1.1 | 1.4 | 0.0417 | -- | -0.472 | 15.9 | 18.47 | 5745 | -- | -- |
| 58.97 | 0.358 | 9.9 | 0.872 | 1.11 | 0.856 | -- | -2.59 | -0.479 | 15.7 | 19.1 | 1713 | -- | -- |
| 62.13 | 0.367 | 9.94 | 1.01 | 1.1 | 1.64 | -- | -- | -0.436 | 15.8 | 18 | 6053 | -- | -- |
| 124.49 | 0.52 | 9.86 | 1.05 | -- | 0.748 | -- | -2.23 | -0.408 | -- | 20.27 | 2627 | -- | -- |
| 92.26 | 0.45 | 10 | 0.101 | 1.1 | -- | 0.0405 | -- | -0.757 | 15.8 | -- | -- | -- | -- |
| 92.27 | 0.45 | 10 | 0.102 | 1.1 | -- | -- | -- | -0.757 | 15.8 | -- | -- | -- | -- |
| 125.58 | 0.522 | 9.93 | 1.17 | -- | 1.73 | -- | -- | -0.42 | -- | 18.05 | 9757 | -- | -- |
| 74.07 | 0.401 | 10 | -- | 1.06 | 1.13 | -- | -- | -0.664 | 15.9 | 18.08 | 3158 | -- | -- |
| 159.29 | 0.59 | 10 | 0.0562 | -- | -- | -- | -- | -0.786 | -- | -- | -- | -- | -- |
| 92.54 | 0.45 | 10 | -- | 1.1 | -- | -- | -- | -0.768 | 15.8 | -- | -- | -- | -- |
| 133.66 | 0.538 | 9.98 | -- | -- | 1.24 | -- | -- | -0.649 | -- | 18.03 | 2656 | -- | -- |
| 159.38 | 0.589 | 10 | -- | -- | -- | -- | -- | -0.792 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 54.91 | temperature | 20 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 2 | 55.39 | temperature | 20 | 14400 | < th | dose independent | rect. | 19 | 3 |
| 4 | 55.42 | temperature | 20 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 6 | 55.86 | temperature | 20 | 14400 | > th | dose independent | rect. | 19 | 3 |
| 71 | 58.28 | humidity | 80 | 14400 | > th | dose dependent | rect. | 12 | 2 |
| 89 | 58.61 | humidity | 60 | 43200 | < th | dose dependent | rect. | 24 | 9 |
| 102 | 58.68 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 105 | 58.71 | wind | 1 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 109 | 58.77 | wind | 9 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 111 | 58.79 | temperature | 20 | 14400 | > th | dose independent | sin | 16 | NA |
| 117 | 58.83 | temperature | 25 | 14400 | < th | dose dependent | rect. | 9 | 1 |
| 127 | 58.91 | humidity | 80 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 137 | 58.99 | temperature | 20 | 14400 | < th | dose independent | sin | 16 | NA |
| 150 | 59.11 | humidity | 60 | 43200 | < th | dose independent | rect. | 21 | 13 |
| 157 | 59.16 | humidity | 60 | 43200 | > th | dose independent | rect. | 21 | 13 |
| 165 | 59.22 | humidity | 60 | 43200 | < th | dose independent | rect. | 24 | 10 |
| 182 | 59.30 | humidity | 80 | 14400 | > th | dose independent | rect. | 12 | 2 |
| 194 | 59.39 | temperature | 30 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 206 | 59.45 | temperature | 20 | 14400 | > th | dose independent | rect. | 7 | 19 |
| 233 | 59.54 | humidity | 80 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 272 | 59.69 | humidity | 90 | 14400 | > th | dose dependent | rect. | 2 | 15 |
| 273 | 59.70 | temperature | 20 | 14400 | < th | dose independent | rect. | 7 | 19 |
| 296 | 59.78 | radiation | 20 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 337 | 59.89 | humidity | 60 | 43200 | < th | dose dependent | sin | 8 | NA |
| 367 | 59.98 | temperature | 25 | 14400 | < th | dose dependent | rect. | 7 | 15 |
| 396 | 60.05 | humidity | 80 | 43200 | > th | dose independent | rect. | 1 | 8 |
| 406 | 60.07 | humidity | 80 | 43200 | < th | dose independent | rect. | 24 | 9 |
| 465 | 60.17 | humidity | 80 | 43200 | > th | dose independent | rect. | 3 | 5 |
| 469 | 60.18 | humidity | 50 | 43200 | < th | dose independent | sin | 8 | NA |
| 474 | 60.18 | temperature | 25 | 14400 | < th | dose dependent | rect. | 19 | 1 |
| 482 | 60.19 | temperature | 25 | 14400 | < th | dose dependent | rect. | 17 | 5 |
| 494 | 60.21 | humidity | 50 | 43200 | > th | dose independent | sin | 8 | NA |
| 521 | 60.26 | humidity | 80 | 14400 | < th | dose independent | rect. | 12 | 2 |
| 538 | 60.29 | temperature | 25 | 14400 | < th | dose dependent | sin | 23 | NA |
| 574 | 60.34 | humidity | 80 | 43200 | < th | dose independent | rect. | 3 | 4 |
| 587 | 60.36 | humidity | 80 | 43200 | > th | dose independent | rect. | 19 | 11 |
| 596 | 60.37 | humidity | 80 | 43200 | < th | dose independent | rect. | 19 | 12 |
| 627 | 60.41 | wind | 3 | 43200 | > th | dose independent | rect. | 5 | 8 |
| 649 | 60.43 | wind | 7 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 670 | 60.45 | humidity | 80 | 43200 | < th | dose independent | sin | 10 | NA |
| 672 | 60.45 | wind | 3 | 43200 | < th | dose independent | rect. | 5 | 8 |
| 689 | 60.46 | temperature | 10 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 734 | 60.50 | humidity | 80 | 43200 | > th | dose independent | rect. | 21 | 12 |
| 742 | 60.51 | humidity | 80 | 43200 | > th | dose independent | sin | 10 | NA |
| 795 | 60.55 | radiation | 20 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 845 | 60.58 | humidity | 50 | 43200 | < th | dose dependent | rect. | 3 | 11 |
| 871 | 60.60 | temperature | 20 | 14400 | > th | dose independent | rect. | 12 | 21 |
| 971 | 60.66 | wind | 9 | 43200 | < th | dose dependent | rect. | 4 | 9 |
| 978 | 60.67 | temperature | 20 | 14400 | < th | dose independent | rect. | 7 | 1 |