BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0581300 Os02g0581300|AK071553
(309 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0581300 TRAM, LAG1 and CLN8 homology domain containing... 514 e-146
Os03g0264000 ASC1-like protein 3 (Alternaria stem canker re... 192 2e-49
Os02g0728300 Longevity-assurance protein (LAG1) domain cont... 146 2e-35
Os09g0372700 TRAM, LAG1 and CLN8 homology domain containing... 95 6e-20
>Os02g0581300 TRAM, LAG1 and CLN8 homology domain containing protein
Length = 309
Score = 514 bits (1325), Expect = e-146, Method: Compositional matrix adjust.
Identities = 255/295 (86%), Positives = 255/295 (86%)
Query: 15 DWEREAYPAYRDXXXXXXXXXXXXXXRYLLDCFVFEWIGRKLIFGKEKVDYEKEETRKKI 74
DWEREAYPAYRD RYLLDCFVFEWIGRKLIFGKEKVDYEKEETRKKI
Sbjct: 15 DWEREAYPAYRDFFALPLFAVFFLVVRYLLDCFVFEWIGRKLIFGKEKVDYEKEETRKKI 74
Query: 75 RKFKESAWKCVYFLSGEILSLSVTYNEPWFTNTKYFWVGPGDQVWPDQKIKWKLKAVYMY 134
RKFKESAWKCVYFLSGEILSLSVTYNEPWFTNTKYFWVGPGDQVWPDQKIKWKLKAVYMY
Sbjct: 75 RKFKESAWKCVYFLSGEILSLSVTYNEPWFTNTKYFWVGPGDQVWPDQKIKWKLKAVYMY 134
Query: 135 AAGFYTYSIFALMFWETRRSDFGVSMSHHVATVALIVLSYVFRFARVGSVVLAIHDASDV 194
AAGFYTYSIFALMFWETRRSDFGVSMSHHVATVALIVLSYVFRFARVGSVVLAIHDASDV
Sbjct: 135 AAGFYTYSIFALMFWETRRSDFGVSMSHHVATVALIVLSYVFRFARVGSVVLAIHDASDV 194
Query: 195 FLEVGKMAKYSHCDXXXXXXXXXXXXSWVLLRLTYFPFWILRSTSYEVLLTLDKKKHNFD 254
FLEVGKMAKYSHCD SWVLLRLTYFPFWILRSTSYEVLLTLDKKKHNFD
Sbjct: 195 FLEVGKMAKYSHCDLLANVAFLLFVVSWVLLRLTYFPFWILRSTSYEVLLTLDKKKHNFD 254
Query: 255 GPIYXXXXXXXXXXXXXXHIYWWVLIYRMLVRQIKTRNVGDDVRSDSEGEDEHED 309
GPIY HIYWWVLIYRMLVRQIKTRNVGDDVRSDSEGEDEHED
Sbjct: 255 GPIYYYVFNSLLFSLLVLHIYWWVLIYRMLVRQIKTRNVGDDVRSDSEGEDEHED 309
>Os03g0264000 ASC1-like protein 3 (Alternaria stem canker resistance-like protein
3)
Length = 284
Score = 192 bits (489), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 108/266 (40%), Positives = 150/266 (56%), Gaps = 8/266 (3%)
Query: 41 RYLLDCFVFEWIGRKLIFGKEKVDYEKEETRKKIRKFKESAWKCVYFLSGEILSLSVTYN 100
R+ LD V++ + K E + KI KF ES WK Y+ S + L +
Sbjct: 26 RFFLDRLVYKPLAAYCFSSKASKLMNDEVRQAKIVKFSESIWKLTYYGSVQAWVLLIIKQ 85
Query: 101 EPWFTNTKYFWVGPGDQVWPDQKIKWKLKAVYMYAAGFYTYSIFALMFWETRRSDFGVSM 160
EPW +T ++ G WP+Q + L YM GFY YSIFAL+ WETRR DF V M
Sbjct: 86 EPWSLDTMQYFEG-----WPNQYMTSSLMLFYMCQCGFYIYSIFALVAWETRRKDFAVMM 140
Query: 161 SHHVATVALIVLSYVFRFARVGSVVLAIHDASDVFLEVGKMAKYSHCDXXXXXXXXXXXX 220
SHHV T LI +Y+ F R+G+++LA+HDASDVFLE K+ KY+ +
Sbjct: 141 SHHVVTSILIGYAYLTGFFRIGTIILALHDASDVFLETAKLCKYTEKELGASLFFGLFAL 200
Query: 221 SWVLLRLTYFPFWILRSTSYEVLLTLDKKKHNFDGPIYXXXXXXXXXXXXXXHIYWWVLI 280
SW+LLRL YFPFWI++++SY+ +++L +K F +Y HIYWW LI
Sbjct: 201 SWLLLRLIYFPFWIIKTSSYQSIISL-RKLEKFPTTLY-YIFNTMLLTLLVFHIYWWKLI 258
Query: 281 YRMLVRQIKTR-NVGDDVRSDSEGED 305
M+++Q+ + VG+DVRSDSE E+
Sbjct: 259 CLMIMKQLNNKGQVGEDVRSDSEDEE 284
>Os02g0728300 Longevity-assurance protein (LAG1) domain containing protein
Length = 118
Score = 146 bits (369), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 72/112 (64%), Positives = 81/112 (72%), Gaps = 1/112 (0%)
Query: 15 DWEREAYPAYRDXXXXXXXXXXXXXXRYLLDCFVFEWIGRKLIFGK-EKVDYEKEETRKK 73
DWE E+YPAY D RYLLD FVFEW+ R+LIF K EK+D R K
Sbjct: 7 DWEAESYPAYSDFAAIPLFAVFLFAVRYLLDRFVFEWLARRLIFEKDEKLDLATHAGRIK 66
Query: 74 IRKFKESAWKCVYFLSGEILSLSVTYNEPWFTNTKYFWVGPGDQVWPDQKIK 125
IRKFKESAWKC+YFLS E+L+LSVTY E WFT+TK FWVGPGDQVWPDQ+IK
Sbjct: 67 IRKFKESAWKCIYFLSAELLALSVTYKESWFTSTKNFWVGPGDQVWPDQRIK 118
>Os09g0372700 TRAM, LAG1 and CLN8 homology domain containing protein
Length = 77
Score = 95.1 bits (235), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 47/72 (65%), Positives = 54/72 (75%), Gaps = 1/72 (1%)
Query: 239 SYEVLLTLDKKKHNFDGPIYXXXXXXXXXXXXXXHIYWWVLIYRMLVRQIKTRN-VGDDV 297
SYEVLLTLDK+KH F GPIY HIYWWVLIYRMLV+QI++R +GDDV
Sbjct: 6 SYEVLLTLDKEKHKFYGPIYYYVFNSLLFSLLVLHIYWWVLIYRMLVKQIQSRGRIGDDV 65
Query: 298 RSDSEGEDEHED 309
RSDSEGE++HED
Sbjct: 66 RSDSEGEEDHED 77
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.325 0.140 0.461
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,397,337
Number of extensions: 290908
Number of successful extensions: 813
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 808
Number of HSP's successfully gapped: 4
Length of query: 309
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 208
Effective length of database: 11,762,187
Effective search space: 2446534896
Effective search space used: 2446534896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 156 (64.7 bits)