Os03g0264000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : ASC1-like protein 3 (Alternaria stem canker resistance-like protein 3).
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Os03g0264000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : ASC1-like protein 3 (Alternaria stem canker resistance-like protein 3).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28.48 | 0.251 | 9.52 | 0.533 | 0.383 | 0.699 | 0.106 | -1.28 | 0.164 | 8.11 | 25.5 | 923 | -- | -- |
| 28.71 | 0.25 | 9.49 | 0.755 | 0.319 | 0.539 | 0.207 | -- | 0.226 | 8.26 | 25.59 | 1025 | -- | -- |
| 28.43 | 0.248 | 9.52 | 0.536 | 0.338 | 0.66 | -- | -1.2 | 0.165 | 8.38 | 25.7 | 1006 | -- | -- |
| 28.79 | 0.25 | 9.49 | 0.777 | 0.306 | 0.526 | -- | -- | 0.224 | 8.4 | 25.7 | 1042 | -- | -- |
| 31.98 | 0.263 | 9.5 | 0.743 | -- | 0.441 | -- | -0.172 | 0.234 | -- | 26.4 | 1293 | -- | -- |
| 37.01 | 0.285 | 9.49 | 0.916 | 0.228 | -- | 0.165 | -- | 0.257 | 6.96 | -- | -- | -- | -- |
| 37.08 | 0.285 | 9.49 | 0.919 | 0.228 | -- | -- | -- | 0.256 | 7.06 | -- | -- | -- | -- |
| 31.98 | 0.263 | 9.5 | 0.785 | -- | 0.421 | -- | -- | 0.242 | -- | 26.37 | 1310 | -- | -- |
| 43.6 | 0.308 | 9.52 | -- | 0.36 | 0.728 | -- | -- | 0.108 | 8.65 | 24.89 | 1025 | -- | -- |
| 39.82 | 0.295 | 9.49 | 0.924 | -- | -- | -- | -- | 0.26 | -- | -- | -- | -- | -- |
| 59.36 | 0.36 | 9.51 | -- | 0.239 | -- | -- | -- | 0.154 | 6.82 | -- | -- | -- | -- |
| 36.51 | 0.281 | 9.58 | -- | -- | 0.768 | -- | -- | -0.104 | -- | 17.8 | 47520 | -- | -- |
| 62.34 | 0.369 | 9.52 | -- | -- | -- | -- | -- | 0.158 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.15 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 21 |
| 2 | 28.18 | radiation | 40 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 18 | 28.38 | temperature | 25 | 720 | > th | dose dependent | sin | 15 | NA |
| 20 | 28.44 | temperature | 25 | 720 | > th | dose dependent | rect. | 13 | 11 |
| 45 | 28.60 | temperature | 25 | 720 | > th | dose dependent | rect. | 13 | 19 |
| 46 | 28.61 | radiation | 40 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 62 | 28.62 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 8 |
| 78 | 28.74 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 17 |
| 83 | 28.77 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 10 |
| 90 | 28.77 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 16 |
| 124 | 28.87 | radiation | 20 | 1440 | > th | dose independent | rect. | 15 | 19 |
| 130 | 28.90 | radiation | 40 | 1440 | > th | dose dependent | rect. | 13 | 21 |
| 140 | 28.97 | radiation | 20 | 1440 | > th | dose independent | sin | 12 | NA |
| 146 | 28.99 | radiation | 1 | 720 | < th | dose independent | rect. | 11 | 14 |
| 172 | 29.09 | wind | 7 | 43200 | > th | dose independent | rect. | 12 | 2 |
| 205 | 29.25 | temperature | 25 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 206 | 29.26 | radiation | 40 | 1440 | > th | dose dependent | sin | 12 | NA |
| 210 | 29.29 | wind | 7 | 43200 | < th | dose independent | rect. | 12 | 2 |
| 230 | 29.32 | radiation | 40 | 1440 | > th | dose independent | rect. | 13 | 21 |
| 233 | 29.33 | radiation | 40 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 239 | 29.35 | radiation | 1 | 720 | > th | dose independent | sin | 20 | NA |
| 245 | 29.36 | temperature | 25 | 90 | < th | dose independent | rect. | 13 | 14 |
| 287 | 29.43 | radiation | 1 | 720 | < th | dose independent | sin | 19 | NA |
| 330 | 29.47 | radiation | 20 | 1440 | > th | dose dependent | rect. | 16 | 16 |
| 340 | 29.49 | radiation | 40 | 1440 | > th | dose dependent | rect. | 13 | 3 |
| 365 | 29.49 | temperature | 25 | 720 | > th | dose dependent | rect. | 16 | 23 |
| 397 | 29.52 | temperature | 25 | 720 | > th | dose dependent | no | NA | NA |
| 405 | 29.53 | humidity | 60 | 1440 | < th | dose dependent | rect. | 15 | 3 |
| 408 | 29.54 | wind | 7 | 43200 | > th | dose dependent | rect. | 12 | 2 |
| 410 | 29.55 | humidity | 50 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 417 | 29.55 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 8 |
| 467 | 29.61 | radiation | 40 | 1440 | > th | dose independent | sin | 12 | NA |
| 495 | 29.64 | humidity | 50 | 1440 | > th | dose independent | rect. | 15 | 2 |
| 498 | 29.64 | temperature | 30 | 720 | < th | dose dependent | rect. | 12 | 9 |
| 500 | 29.65 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 521 | 29.70 | humidity | 70 | 720 | > th | dose independent | rect. | 19 | 1 |
| 529 | 29.70 | radiation | 20 | 1440 | > th | dose dependent | rect. | 15 | 19 |
| 540 | 29.71 | temperature | 25 | 720 | > th | dose dependent | rect. | 22 | 23 |
| 544 | 29.72 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 22 |
| 556 | 29.73 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 23 |
| 557 | 29.74 | radiation | 30 | 1440 | < th | dose independent | rect. | 20 | 12 |
| 562 | 29.74 | wind | 7 | 43200 | > th | dose dependent | rect. | 12 | 5 |
| 575 | 29.74 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 11 |
| 611 | 29.75 | humidity | 60 | 1440 | < th | dose dependent | rect. | 13 | 21 |
| 615 | 29.76 | humidity | 60 | 1440 | < th | dose dependent | sin | 13 | NA |
| 627 | 29.77 | radiation | 20 | 1440 | > th | dose independent | rect. | 6 | 4 |
| 632 | 29.77 | radiation | 30 | 1440 | < th | dose independent | rect. | 24 | 8 |
| 696 | 29.79 | radiation | 20 | 1440 | > th | dose dependent | sin | 12 | NA |
| 740 | 29.81 | radiation | 1 | 720 | > th | dose independent | rect. | 16 | 14 |
| 741 | 29.81 | radiation | 1 | 720 | < th | dose independent | rect. | 11 | 19 |
| 778 | 29.83 | wind | 7 | 4320 | < th | dose independent | rect. | 14 | 2 |
| 807 | 29.83 | radiation | 1 | 720 | < th | dose dependent | rect. | 11 | 15 |
| 817 | 29.84 | radiation | 30 | 1440 | < th | dose independent | rect. | 7 | 1 |
| 836 | 29.84 | temperature | 25 | 1440 | > th | dose dependent | rect. | 21 | 20 |
| 838 | 29.85 | humidity | 60 | 1440 | > th | dose independent | sin | 15 | NA |
| 871 | 29.86 | humidity | 60 | 1440 | > th | dose independent | rect. | 13 | 6 |
| 905 | 29.87 | humidity | 60 | 1440 | < th | dose independent | sin | 14 | NA |
| 951 | 29.89 | humidity | 50 | 1440 | > th | dose independent | rect. | 13 | 4 |
| 995 | 29.90 | wind | 7 | 4320 | > th | dose independent | rect. | 14 | 2 |