BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0264000 Os03g0264000|AK101372
         (284 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0264000  ASC1-like protein 3 (Alternaria stem canker re...   541   e-154
Os02g0581300  TRAM, LAG1 and CLN8 homology domain containing...   208   4e-54
Os09g0372700  TRAM, LAG1 and CLN8 homology domain containing...    74   2e-13

>Os03g0264000 ASC1-like protein 3 (Alternaria stem canker resistance-like protein
           3)
          Length = 284

 Score =  541 bits (1393), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 265/284 (93%), Positives = 265/284 (93%)

Query: 1   MAIRGPEASSFFPLTLVFSVGFFCARFFLDRLVYKPLAAYCFSSKASKLMNDEVRQAKIV 60
           MAIRGPEASSFFPLTLVFSVGFFCARFFLDRLVYKPLAAYCFSSKASKLMNDEVRQAKIV
Sbjct: 1   MAIRGPEASSFFPLTLVFSVGFFCARFFLDRLVYKPLAAYCFSSKASKLMNDEVRQAKIV 60

Query: 61  KFSESIWKLTYYGSVQAWVLLIIKQEPWSLDTMQYFEGWPNQYMTSSLMLFYMCQCGFYI 120
           KFSESIWKLTYYGSVQAWVLLIIKQEPWSLDTMQYFEGWPNQYMTSSLMLFYMCQCGFYI
Sbjct: 61  KFSESIWKLTYYGSVQAWVLLIIKQEPWSLDTMQYFEGWPNQYMTSSLMLFYMCQCGFYI 120

Query: 121 YSIFALVAWETRRKDFAVMMSHHVVTSILIGYAYLTGFFRIGTIILALHDASDVFLETAK 180
           YSIFALVAWETRRKDFAVMMSHHVVTSILIGYAYLTGFFRIGTIILALHDASDVFLETAK
Sbjct: 121 YSIFALVAWETRRKDFAVMMSHHVVTSILIGYAYLTGFFRIGTIILALHDASDVFLETAK 180

Query: 181 LCKYTEKEXXXXXXXXXXXXXXXXXXXIYFPFWIIKTSSYQSIISLRKLEKFPTTLYYIF 240
           LCKYTEKE                   IYFPFWIIKTSSYQSIISLRKLEKFPTTLYYIF
Sbjct: 181 LCKYTEKELGASLFFGLFALSWLLLRLIYFPFWIIKTSSYQSIISLRKLEKFPTTLYYIF 240

Query: 241 NTMLLTLLVFHIYWWKLICLMIMKQLNNKGQVGEDVRSDSEDEE 284
           NTMLLTLLVFHIYWWKLICLMIMKQLNNKGQVGEDVRSDSEDEE
Sbjct: 241 NTMLLTLLVFHIYWWKLICLMIMKQLNNKGQVGEDVRSDSEDEE 284



>Os02g0581300 TRAM, LAG1 and CLN8 homology domain containing protein
          Length = 309

 Score =  208 bits (529), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 117/286 (40%), Positives = 163/286 (56%), Gaps = 9/286 (3%)

Query: 6   PEASSFFPLTLVFSVGFFCARFFLDRLVYKPLAAYCFSSKASKLMNDEVRQAKIVKFSES 65
           P    FF L L F+V F   R+ LD  V++ +       K       E  + KI KF ES
Sbjct: 22  PAYRDFFALPL-FAVFFLVVRYLLDCFVFEWIGRKLIFGKEKVDYEKEETRKKIRKFKES 80

Query: 66  IWKLTYYGSVQAWVLLIIKQEPWSLDTMQYFEG-----WPNQYMTSSLMLFYMCQCGFYI 120
            WK  Y+ S +   L +   EPW  +T  ++ G     WP+Q +   L   YM   GFY 
Sbjct: 81  AWKCVYFLSGEILSLSVTYNEPWFTNTKYFWVGPGDQVWPDQKIKWKLKAVYMYAAGFYT 140

Query: 121 YSIFALVAWETRRKDFAVMMSHHVVTSILIGYAYLTGFFRIGTIILALHDASDVFLETAK 180
           YSIFAL+ WETRR DF V MSHHV T  LI  +Y+  F R+G+++LA+HDASDVFLE  K
Sbjct: 141 YSIFALMFWETRRSDFGVSMSHHVATVALIVLSYVFRFARVGSVVLAIHDASDVFLEVGK 200

Query: 181 LCKYTEKEXXXXXXXXXXXXXXXXXXXIYFPFWIIKTSSYQSIISL-RKLEKFPTTL-YY 238
           + KY+  +                    YFPFWI++++SY+ +++L +K   F   + YY
Sbjct: 201 MAKYSHCDLLANVAFLLFVVSWVLLRLTYFPFWILRSTSYEVLLTLDKKKHNFDGPIYYY 260

Query: 239 IFNTMLLTLLVFHIYWWKLICLMIMKQLNNKGQVGEDVRSDSEDEE 284
           +FN++L +LLV HIYWW LI  M+++Q+  +  VG+DVRSDSE E+
Sbjct: 261 VFNSLLFSLLVLHIYWWVLIYRMLVRQIKTR-NVGDDVRSDSEGED 305



>Os09g0372700 TRAM, LAG1 and CLN8 homology domain containing protein
          Length = 77

 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 33/68 (48%), Positives = 51/68 (75%), Gaps = 2/68 (2%)

Query: 219 SYQSIISLRKLEK--FPTTLYYIFNTMLLTLLVFHIYWWKLICLMIMKQLNNKGQVGEDV 276
           SY+ +++L K +   +    YY+FN++L +LLV HIYWW LI  M++KQ+ ++G++G+DV
Sbjct: 6   SYEVLLTLDKEKHKFYGPIYYYVFNSLLFSLLVLHIYWWVLIYRMLVKQIQSRGRIGDDV 65

Query: 277 RSDSEDEE 284
           RSDSE EE
Sbjct: 66  RSDSEGEE 73



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.329    0.140    0.444 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,867,239
Number of extensions: 258308
Number of successful extensions: 621
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 617
Number of HSP's successfully gapped: 3
Length of query: 284
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 184
Effective length of database: 11,814,401
Effective search space: 2173849784
Effective search space used: 2173849784
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 155 (64.3 bits)