Os09g0372700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : TRAM, LAG1 and CLN8 homology domain containing protein.
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Os09g0372700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : TRAM, LAG1 and CLN8 homology domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 62.46 | 0.371 | 8.1 | -1.5 | 1.24 | 0.207 | -0.507 | 3.66 | -0.0113 | 23.3 | 30.46 | 1224 | -- | -- |
| 64.26 | 0.373 | 8.17 | -2.15 | 1.27 | 0.689 | -0.387 | -- | 0.00671 | 23.3 | 30.7 | 2597 | -- | -- |
| 63.19 | 0.37 | 8.1 | -1.47 | 1.24 | 0.187 | -- | 3.71 | -0.0192 | 23.3 | 30.71 | 1215 | -- | -- |
| 64.83 | 0.375 | 8.19 | -2.11 | 1.24 | 0.634 | -- | -- | -0.0763 | 23.3 | 29.8 | 2633 | -- | -- |
| 154.96 | 0.58 | 8.06 | -1.46 | -- | 0.399 | -- | 4.32 | 0.0363 | -- | 31.39 | 1079 | -- | -- |
| 82.09 | 0.425 | 8.21 | -1.98 | 1.32 | -- | -0.35 | -- | -0.14 | 23.5 | -- | -- | -- | -- |
| 82.62 | 0.426 | 8.21 | -1.96 | 1.32 | -- | -- | -- | -0.139 | 23.5 | -- | -- | -- | -- |
| 155.11 | 0.58 | 8.19 | -2.2 | -- | 0.943 | -- | -- | -0.191 | -- | 29.3 | 2458 | -- | -- |
| 180.18 | 0.625 | 8.14 | -- | 1.28 | 0.356 | -- | -- | 0.137 | 23.3 | 32.31 | 2542 | -- | -- |
| 191.8 | 0.647 | 8.18 | -1.93 | -- | -- | -- | -- | -0.125 | -- | -- | -- | -- | -- |
| 184.22 | 0.635 | 8.16 | -- | 1.3 | -- | -- | -- | 0.0796 | 23.4 | -- | -- | -- | -- |
| 270.64 | 0.769 | 8.12 | -- | -- | -0.57 | -- | -- | 0.111 | -- | 29.3 | 2458 | -- | -- |
| 289.88 | 0.795 | 8.13 | -- | -- | -- | -- | -- | 0.0888 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 61.38 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 3 | 16 |
| 2 | 61.38 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 3 | 61.74 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 19 | 8 |
| 4 | 61.95 | temperature | 10.0 | 90 | > th | dose independent | rect. | 19 | 8 |
| 5 | 61.95 | temperature | 30.0 | 90 | < th | dose independent | rect. | 19 | 8 |
| 6 | 61.95 | humidity | 50.0 | 90 | > th | dose independent | rect. | 19 | 8 |
| 9 | 61.95 | radiation | 1.0 | 90 | < th | dose independent | rect. | 19 | 8 |
| 14 | 61.95 | temperature | 10.0 | 90 | > th | dose independent | rect. | 3 | 16 |
| 15 | 61.95 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 3 | 16 |
| 16 | 61.95 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 19 | 8 |
| 21 | 61.97 | wind | 9.0 | 90 | < th | dose independent | rect. | 19 | 8 |
| 22 | 62.29 | wind | 9.0 | 90 | < th | dose independent | rect. | 3 | 16 |
| 23 | 62.35 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 17 | 16 |
| 24 | 62.43 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 17 | 16 |
| 28 | 62.57 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 17 | 14 |
| 31 | 62.61 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 17 | 3 |
| 32 | 62.61 | temperature | 30.0 | 4320 | > th | dose dependent | rect. | 17 | 2 |
| 46 | 62.63 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 16 | 3 |
| 56 | 62.63 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 17 | 12 |
| 68 | 62.67 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 17 | 6 |
| 83 | 62.72 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 17 | 10 |
| 91 | 62.77 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 19 | 8 |
| 106 | 62.87 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 19 | 8 |
| 107 | 62.87 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 19 | 8 |
| 113 | 63.13 | temperature | 30.0 | 1440 | > th | dose independent | sin | 11 | NA |
| 114 | 63.17 | temperature | 30.0 | 1440 | > th | dose dependent | rect. | 17 | 18 |
| 115 | 63.18 | temperature | 30.0 | 1440 | < th | dose independent | sin | 11 | NA |
| 142 | 63.43 | temperature | 30.0 | 1440 | > th | dose dependent | sin | 10 | NA |
| 147 | 63.50 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 17 | 8 |
| 158 | 63.63 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 19 | 8 |
| 164 | 63.72 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 16 | 9 |
| 165 | 63.73 | radiation | 1.0 | 270 | < th | dose independent | rect. | 16 | 9 |
| 170 | 63.78 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 14 | 15 |
| 171 | 63.78 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 14 | 15 |
| 216 | 63.92 | temperature | 30.0 | 1440 | > th | dose dependent | rect. | 12 | 23 |
| 224 | 63.95 | radiation | 20.0 | 1440 | > th | dose independent | rect. | 16 | 15 |
| 225 | 63.95 | temperature | 30.0 | 1440 | > th | dose dependent | sin | 15 | NA |
| 230 | 63.96 | temperature | 30.0 | 1440 | > th | dose dependent | no | NA | NA |
| 232 | 63.96 | temperature | 30.0 | 1440 | > th | dose dependent | rect. | 8 | 11 |
| 347 | 63.99 | temperature | 30.0 | 1440 | > th | dose dependent | rect. | 12 | 7 |
| 501 | 64.20 | radiation | 20.0 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 553 | 64.24 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 3 | 16 |
| 562 | 64.29 | temperature | 15.0 | 270 | > th | dose independent | rect. | 5 | 8 |
| 590 | 64.34 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 16 |
| 591 | 64.34 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 16 |
| 608 | 64.37 | temperature | 30.0 | 1440 | > th | dose dependent | rect. | 12 | 3 |
| 635 | 64.41 | temperature | 30.0 | 270 | < th | dose independent | rect. | 17 | 8 |
| 642 | 64.42 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 699 | 64.54 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 17 | 8 |
| 706 | 64.57 | temperature | 30.0 | 1440 | > th | dose independent | no | NA | NA |
| 707 | 64.57 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 8 | 11 |
| 823 | 64.59 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 3 | 16 |
| 869 | 64.69 | temperature | 10.0 | 270 | > th | dose independent | rect. | 17 | 8 |
| 871 | 64.69 | radiation | 20.0 | 270 | < th | dose independent | rect. | 17 | 8 |
| 881 | 64.69 | temperature | 10.0 | 270 | > th | dose independent | rect. | 1 | 16 |
| 882 | 64.69 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 1 | 16 |
| 910 | 64.74 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 13 | 6 |
| 959 | 64.77 | humidity | 50.0 | 90 | > th | dose independent | rect. | 3 | 16 |
| 962 | 64.79 | wind | 1.0 | 4320 | < th | dose independent | rect. | 4 | 2 |
| 979 | 64.81 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 7 | 21 |
| 991 | 64.82 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 8 | 17 |