BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0372700 Os09g0372700|AK067111
         (77 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G13580.2  | chr1:4645006-4646765 REVERSE LENGTH=309             93   3e-20
AT3G25540.1  | chr3:9274752-9276261 FORWARD LENGTH=311             83   2e-17
AT1G26200.1  | chr1:9063471-9064914 REVERSE LENGTH=313             61   1e-10
AT3G19260.1  | chr3:6669448-6671257 REVERSE LENGTH=297             51   1e-07

>AT1G13580.2 | chr1:4645006-4646765 REVERSE LENGTH=309
          Length = 308

 Score = 92.8 bits (229), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 44/72 (61%), Positives = 52/72 (72%)

Query: 6   SYEVLLTLDKEKHKFYGPIYXXXXXXXXXXXXXXHIYWWVLIYRMLVKQIQSRGRIGDDV 65
           SYEV+L LDK+KH   GPIY              HIYWWVL+YRMLVKQIQ RG++ +DV
Sbjct: 237 SYEVVLELDKDKHPIEGPIYYYMFNTLLYCLLVLHIYWWVLMYRMLVKQIQDRGKLSEDV 296

Query: 66  RSDSEGEEDHED 77
           RSDSEGE++HED
Sbjct: 297 RSDSEGEDEHED 308



>AT3G25540.1 | chr3:9274752-9276261 FORWARD LENGTH=311
          Length = 310

 Score = 83.2 bits (204), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 38/72 (52%), Positives = 51/72 (70%), Gaps = 1/72 (1%)

Query: 6   SYEVLLTLDKEKHKFYGPIYXXXXXXXXXXXXXXHIYWWVLIYRMLVKQIQSRGRIGDDV 65
           SY++++T+DKEKH   GPI               HI+WWVLIYRMLVKQ+Q RG++ +DV
Sbjct: 240 SYQIIMTVDKEKHP-NGPILYYMFNTLLYFLLVLHIFWWVLIYRMLVKQVQDRGKLSEDV 298

Query: 66  RSDSEGEEDHED 77
           RSDSE +++HED
Sbjct: 299 RSDSESDDEHED 310



>AT1G26200.1 | chr1:9063471-9064914 REVERSE LENGTH=313
          Length = 312

 Score = 61.2 bits (147), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 24/39 (61%), Positives = 35/39 (89%), Gaps = 1/39 (2%)

Query: 40  HIYWWVLIYRMLVKQIQSRGRIGDDVRSDSEGEED-HED 77
           HIYWW+LIYR+L+ QI+++G++  D+RSDSEGE+D H+D
Sbjct: 274 HIYWWILIYRVLISQIRAKGKVAKDIRSDSEGEDDEHQD 312



>AT3G19260.1 | chr3:6669448-6671257 REVERSE LENGTH=297
          Length = 296

 Score = 50.8 bits (120), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 19/35 (54%), Positives = 30/35 (85%)

Query: 40  HIYWWVLIYRMLVKQIQSRGRIGDDVRSDSEGEED 74
           HIYWW LI  M+V+ +++RG++G+D+RSDSE ++D
Sbjct: 262 HIYWWYLICAMIVRLLKNRGKVGEDIRSDSEDDDD 296



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.142    0.446 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,458,175
Number of extensions: 37017
Number of successful extensions: 115
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 4
Length of query: 77
Length of database: 11,106,569
Length adjustment: 49
Effective length of query: 28
Effective length of database: 9,763,185
Effective search space: 273369180
Effective search space used: 273369180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 104 (44.7 bits)