BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0372700 Os09g0372700|AK067111
         (77 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0372700  TRAM, LAG1 and CLN8 homology domain containing...   126   3e-30
Os02g0581300  TRAM, LAG1 and CLN8 homology domain containing...    95   9e-21

>Os09g0372700 TRAM, LAG1 and CLN8 homology domain containing protein
          Length = 77

 Score =  126 bits (317), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 63/77 (81%), Positives = 63/77 (81%)

Query: 1  SGTFFSYEVLLTLDKEKHKFYGPIYXXXXXXXXXXXXXXHIYWWVLIYRMLVKQIQSRGR 60
          SGTFFSYEVLLTLDKEKHKFYGPIY              HIYWWVLIYRMLVKQIQSRGR
Sbjct: 1  SGTFFSYEVLLTLDKEKHKFYGPIYYYVFNSLLFSLLVLHIYWWVLIYRMLVKQIQSRGR 60

Query: 61 IGDDVRSDSEGEEDHED 77
          IGDDVRSDSEGEEDHED
Sbjct: 61 IGDDVRSDSEGEEDHED 77



>Os02g0581300 TRAM, LAG1 and CLN8 homology domain containing protein
          Length = 309

 Score = 95.1 bits (235), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 47/72 (65%), Positives = 54/72 (75%), Gaps = 1/72 (1%)

Query: 6   SYEVLLTLDKEKHKFYGPIYXXXXXXXXXXXXXXHIYWWVLIYRMLVKQIQSRGRIGDDV 65
           SYEVLLTLDK+KH F GPIY              HIYWWVLIYRMLV+QI++R  +GDDV
Sbjct: 239 SYEVLLTLDKKKHNFDGPIYYYVFNSLLFSLLVLHIYWWVLIYRMLVRQIKTRN-VGDDV 297

Query: 66  RSDSEGEEDHED 77
           RSDSEGE++HED
Sbjct: 298 RSDSEGEDEHED 309



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.142    0.446 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,141,046
Number of extensions: 52234
Number of successful extensions: 154
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 153
Number of HSP's successfully gapped: 2
Length of query: 77
Length of database: 17,035,801
Length adjustment: 48
Effective length of query: 29
Effective length of database: 14,529,529
Effective search space: 421356341
Effective search space used: 421356341
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 149 (62.0 bits)