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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0581300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : TRAM, LAG1 and CLN8 homology domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.7 (0.0112) R2 : 0.111
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.178 (0.0235) R2dN8 : 0.144 R2N8 : 0.111
σ : 0.21
deviance : 20.31
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
14.43 0.178 11.7 -0.169 0.262 0.296 -0.0385 -0.0646 0.11 2.09 20 304 -- --
14.42 0.177 11.7 -0.162 0.258 0.311 -0.0244 -- 0.108 2.16 20.01 340 -- --
14.42 0.177 11.7 -0.169 0.257 0.302 -- -0.0541 0.109 2.14 20.1 337 -- --
14.42 0.177 11.7 -0.161 0.254 0.31 -- -- 0.109 2.21 20.01 355 -- --
17.68 0.196 11.7 -0.176 -- 0.299 -- -0.0595 0.106 -- 20.2 852 -- --
17.14 0.194 11.7 -0.0592 0.226 -- -0.00139 -- 0.167 1.74 -- -- -- --
17.14 0.194 11.7 -0.0592 0.226 -- -- -- 0.167 1.74 -- -- -- --
17.68 0.196 11.7 -0.164 -- 0.297 -- -- 0.106 -- 20.51 856 -- --
15.04 0.181 11.7 -- 0.251 0.264 -- -- 0.133 2.04 20.1 330 -- --
20.25 0.21 11.7 -0.05 -- -- -- -- 0.172 -- -- -- -- --
17.23 0.194 11.7 -- 0.225 -- -- -- 0.174 1.73 -- -- -- --
18.29 0.199 11.7 -- -- 0.243 -- -- 0.133 -- 20.5 753 -- --
20.31 0.21 11.7 -- -- -- -- -- 0.178 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 13.53 radiation 20.0 1440 < th dose independent rect. 11 1
3 13.75 radiation 20.0 1440 < th dose dependent rect. 11 1
8 14.16 temperature 20.0 270 < th dose independent rect. 15 17
11 14.17 temperature 20.0 270 > th dose independent sin 11 NA
24 14.23 temperature 20.0 270 < th dose independent sin 11 NA
37 14.27 temperature 20.0 270 > th dose independent rect. 17 23
44 14.29 temperature 20.0 270 > th dose independent rect. 21 8
47 14.30 temperature 20.0 270 > th dose independent rect. 21 11
49 14.30 temperature 20.0 270 > th dose independent rect. 9 23
50 14.31 humidity 90.0 14400 > th dose independent rect. 19 9
51 14.31 humidity 90.0 14400 > th dose independent rect. 17 11
57 14.33 temperature 20.0 270 > th dose independent rect. 19 23
66 14.35 radiation 20.0 1440 < th dose independent rect. 8 5
81 14.37 humidity 90.0 14400 > th dose independent sin 12 NA
84 14.37 temperature 20.0 720 > th dose independent rect. 17 8
87 14.37 humidity 90.0 14400 > th dose independent rect. 21 11
102 14.39 humidity 90.0 14400 > th dose independent rect. 21 4
107 14.39 temperature 20.0 270 > th dose independent rect. 6 23
136 14.43 temperature 20.0 270 < th dose independent rect. 21 11
148 14.43 radiation 10.0 1440 < th dose dependent rect. 8 7
151 14.44 humidity 90.0 14400 > th dose independent rect. 22 2
167 14.46 radiation 20.0 1440 > th dose independent rect. 11 2
192 14.48 temperature 20.0 270 > th dose independent no NA NA
206 14.49 temperature 20.0 270 < th dose independent no NA NA
211 14.49 wind 1.0 43200 > th dose independent rect. 22 8
214 14.49 temperature 20.0 720 < th dose independent rect. 17 8
216 14.49 radiation 20.0 1440 < th dose independent rect. 4 9
227 14.49 temperature 20.0 270 > th dose independent rect. 21 19
277 14.51 wind 1.0 43200 > th dose independent rect. 20 10
278 14.51 temperature 20.0 720 > th dose independent rect. 15 10
301 14.51 temperature 20.0 270 < th dose independent rect. 5 23
302 14.51 temperature 20.0 270 < th dose independent rect. 21 23
305 14.52 humidity 70.0 1440 < th dose independent rect. 11 2
340 14.53 radiation 1.0 1440 > th dose dependent rect. 11 2
356 14.54 temperature 20.0 270 < th dose independent rect. 3 23
377 14.56 wind 1.0 43200 > th dose independent rect. 18 12
386 14.56 humidity 90.0 14400 > th dose dependent rect. 4 4
395 14.57 humidity 90.0 14400 < th dose independent rect. 18 10
412 14.58 humidity 90.0 14400 < th dose independent rect. 19 8
423 14.59 temperature 20.0 720 < th dose independent sin 16 NA
424 14.59 humidity 90.0 14400 < th dose independent rect. 21 6
426 14.59 wind 1.0 43200 < th dose independent rect. 22 8
443 14.60 humidity 90.0 14400 > th dose independent rect. 13 1
466 14.60 humidity 90.0 14400 > th dose dependent rect. 3 6
472 14.61 humidity 90.0 14400 < th dose independent rect. 22 1
479 14.61 wind 1.0 43200 < th dose independent rect. 20 10
487 14.61 temperature 20.0 720 > th dose independent rect. 13 14
492 14.61 temperature 20.0 270 > th dose independent rect. 10 17
509 14.61 humidity 90.0 14400 > th dose dependent rect. 13 19
538 14.62 wind 9.0 43200 < th dose dependent rect. 4 2
539 14.62 humidity 80.0 14400 > th dose dependent rect. 13 2
542 14.63 radiation 20.0 1440 < th dose independent sin 2 NA
550 14.63 wind 1.0 43200 < th dose independent rect. 18 12
568 14.63 humidity 90.0 14400 > th dose dependent rect. 15 17
571 14.64 humidity 90.0 14400 < th dose independent sin 12 NA
574 14.64 temperature 20.0 1440 > th dose independent rect. 6 1
580 14.64 temperature 20.0 10 > th dose independent rect. 22 7
591 14.64 humidity 90.0 14400 < th dose independent rect. 21 12
598 14.64 radiation 10.0 1440 < th dose independent rect. 9 15
601 14.64 radiation 10.0 1440 < th dose independent rect. 9 19
609 14.64 radiation 20.0 1440 < th dose independent rect. 11 22
614 14.64 radiation 20.0 1440 < th dose dependent rect. 3 12
619 14.64 humidity 90.0 14400 > th dose dependent rect. 24 18
626 14.65 wind 7.0 4320 > th dose independent rect. 18 3
654 14.65 wind 1.0 43200 > th dose dependent rect. 4 2
675 14.66 atmosphere 1005.0 14400 > th dose independent rect. 23 1
676 14.66 humidity 70.0 1440 > th dose independent rect. 11 2
715 14.67 radiation 10.0 1440 < th dose independent sin 20 NA
719 14.67 precipitation 0.1 14400 > th dose independent rect. 14 1
729 14.67 humidity 90.0 14400 < th dose independent rect. 17 15
736 14.67 precipitation 0.1 14400 > th dose dependent rect. 14 1
757 14.68 wind 1.0 43200 > th dose independent rect. 4 3
796 14.68 humidity 90.0 14400 > th dose dependent rect. 6 2
797 14.68 wind 7.0 4320 > th dose dependent rect. 18 3
823 14.69 humidity 90.0 14400 < th dose independent rect. 13 1
824 14.69 atmosphere 1005.0 43200 > th dose independent rect. 3 1
832 14.69 humidity 90.0 14400 < th dose independent rect. 24 9
852 14.69 temperature 20.0 10 > th dose independent rect. 12 17
864 14.69 wind 9.0 43200 < th dose dependent rect. 1 5
907 14.70 humidity 80.0 1440 < th dose independent rect. 23 15
930 14.70 radiation 10.0 1440 < th dose dependent sin 0 NA
936 14.70 wind 1.0 43200 > th dose dependent rect. 1 5
939 14.70 wind 5.0 4320 > th dose dependent rect. 18 9