BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0581300 Os02g0581300|AK071553
(309 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G13580.2 | chr1:4645006-4646765 REVERSE LENGTH=309 377 e-105
AT3G25540.1 | chr3:9274752-9276261 FORWARD LENGTH=311 355 2e-98
AT1G26200.1 | chr1:9063471-9064914 REVERSE LENGTH=313 285 2e-77
AT3G19260.1 | chr3:6669448-6671257 REVERSE LENGTH=297 210 6e-55
>AT1G13580.2 | chr1:4645006-4646765 REVERSE LENGTH=309
Length = 308
Score = 377 bits (968), Expect = e-105, Method: Compositional matrix adjust.
Identities = 188/298 (63%), Positives = 220/298 (73%), Gaps = 3/298 (1%)
Query: 15 DWEREAYPAYRDXXXXXXXXXXXXXXRYLLDCFVFEWIGRKLIFGKEKVDY--EKEETRK 72
+WE E+ P Y+D R+LLD FVFE + + LI+GK + D + E +K
Sbjct: 11 NWEHESSPVYQDFRVLPLFAVFFPSIRFLLDRFVFEKLAKYLIYGKHRQDMGDDTTERKK 70
Query: 73 KIRKFKESAWKCVYFLSGEILSLSVTYNEPWFTNTKYFWVGPGDQVWPDQKIKWKLKAVY 132
KIRKFKESAWKCVY+LS EIL+LSVTYNEPWF NTKYFWVGPGDQ WPDQ+ K KLK +Y
Sbjct: 71 KIRKFKESAWKCVYYLSAEILALSVTYNEPWFMNTKYFWVGPGDQTWPDQQTKLKLKLLY 130
Query: 133 MYAAGFYTYSIFALMFWETRRSDFGVSMSHHVATVALIVLSYVFRFARVGSVVLAIHDAS 192
M+ AGFYTYSIFAL+FWETRRSDFGVSM HH+AT+ LIVLSYV F+RVGSVVLA+HDAS
Sbjct: 131 MFVAGFYTYSIFALVFWETRRSDFGVSMGHHIATLILIVLSYVCSFSRVGSVVLALHDAS 190
Query: 193 DVFLEVGKMAKYSHCDXXXXXXXXXXXXSWVLLRLTYFPFWILRSTSYEVLLTLDKKKHN 252
DVFLEVGKM+KYS + SW++LRL Y+PFWIL STSYEV+L LDK KH
Sbjct: 191 DVFLEVGKMSKYSGAERIASFSFILFVLSWIILRLIYYPFWILWSTSYEVVLELDKDKHP 250
Query: 253 FDGPIYXXXXXXXXXXXXXXHIYWWVLIYRMLVRQIKTRN-VGDDVRSDSEGEDEHED 309
+GPIY HIYWWVL+YRMLV+QI+ R + +DVRSDSEGEDEHED
Sbjct: 251 IEGPIYYYMFNTLLYCLLVLHIYWWVLMYRMLVKQIQDRGKLSEDVRSDSEGEDEHED 308
>AT3G25540.1 | chr3:9274752-9276261 FORWARD LENGTH=311
Length = 310
Score = 355 bits (910), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 168/301 (55%), Positives = 218/301 (72%), Gaps = 7/301 (2%)
Query: 15 DWEREAYPAYRDXXXXXXXXXXXXXXRYLLDCFVFEWIGRKLIFGKEKVDY-----EKEE 69
DWE+E++P Y+D R+LLD FVFE + +I+G+ + ++++
Sbjct: 11 DWEQESFPTYQDLGFLPLFAVFFPTIRFLLDRFVFEKLASLVIYGRMSTNKSDNIKDRKK 70
Query: 70 TRKKIRKFKESAWKCVYFLSGEILSLSVTYNEPWFTNTKYFWVGPGDQVWPDQKIKWKLK 129
K+RKFKESAWKC+Y+LS E+L+LSVTYNEPWF+NT YFW+GPGDQ+WPDQ +K KLK
Sbjct: 71 NSPKVRKFKESAWKCIYYLSAELLALSVTYNEPWFSNTLYFWIGPGDQIWPDQPMKMKLK 130
Query: 130 AVYMYAAGFYTYSIFALMFWETRRSDFGVSMSHHVATVALIVLSYVFRFARVGSVVLAIH 189
+YM+AAGFYTYSIFAL+FWETRRSDFGVSM HH+ T+ LIVLSY+ R R GSV+LA+H
Sbjct: 131 FLYMFAAGFYTYSIFALVFWETRRSDFGVSMGHHITTLVLIVLSYICRLTRAGSVILALH 190
Query: 190 DASDVFLEVGKMAKYSHCDXXXXXXXXXXXXSWVLLRLTYFPFWILRSTSYEVLLTLDKK 249
DASDVFLE+GKM+KY + SWV+LRL Y+PFWIL STSY++++T+DK+
Sbjct: 191 DASDVFLEIGKMSKYCGAESLASISFVLFALSWVVLRLIYYPFWILWSTSYQIIMTVDKE 250
Query: 250 KHNFDGPIYXXXXXXXXXXXXXXHIYWWVLIYRMLVRQIKTRN-VGDDVRSDSEGEDEHE 308
KH +GPI HI+WWVLIYRMLV+Q++ R + +DVRSDSE +DEHE
Sbjct: 251 KHP-NGPILYYMFNTLLYFLLVLHIFWWVLIYRMLVKQVQDRGKLSEDVRSDSESDDEHE 309
Query: 309 D 309
D
Sbjct: 310 D 310
>AT1G26200.1 | chr1:9063471-9064914 REVERSE LENGTH=313
Length = 312
Score = 285 bits (730), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 150/304 (49%), Positives = 190/304 (62%), Gaps = 10/304 (3%)
Query: 15 DWEREAYPAYRDXXXXXXXXXXXXXXRYLLDCFVFEWIGRKLIFGKEKVDYEKEETRKKI 74
DW++E+YP D R +LD +FE + R+L+ K + + E RKK+
Sbjct: 10 DWDQESYPDSSDFLVLIFFAPFFLFLRLILDRCIFERVARRLVVPK-GLCADSNERRKKV 68
Query: 75 RKFKESAWKCVYFLSGEILSLSVTYNEPWFTNTKYFWVGPGDQVWPDQKIKWKLKAVYMY 134
KFKESAWKC+ S E +L VTY EPWF +T+ FW+GPGDQVWPDQKIK K+K +YM+
Sbjct: 69 VKFKESAWKCLCSFSVEAFALYVTYKEPWFKDTRSFWLGPGDQVWPDQKIKLKMKGMYMF 128
Query: 135 AAGFYTYSIFALMFWETRRSDFGVSMSHHVATVALIVLSYVFRFARVGSVVLAIHDASDV 194
G Y+ FAL FWETRRSDF V + HH+ T LI+LSYVFRFAR+GSV+LA+H+ SDV
Sbjct: 129 VGGLNVYAFFALFFWETRRSDFKVMLVHHIVTSFLIILSYVFRFARIGSVILALHEISDV 188
Query: 195 FLEVGKMAKYSHCDXXXXXXXXXXXXSWVLLRLTYFPFWILRSTSYEVLLTL----DKKK 250
FLE+GKM KYS + SW LRL Y+PFWIL STSYE + DKK
Sbjct: 189 FLEIGKMCKYSGAETMTSVSFVLFFLSWTTLRLIYYPFWILWSTSYESIKVKTEYWDKKH 248
Query: 251 HNFDGP---IYXXXXXXXXXXXXXXHIYWWVLIYRMLVRQIKTRN-VGDDVRSDSEGE-D 305
GP ++ HIYWW+LIYR+L+ QI+ + V D+RSDSEGE D
Sbjct: 249 LMETGPPLILFYYVFNTLLYCLQILHIYWWILIYRVLISQIRAKGKVAKDIRSDSEGEDD 308
Query: 306 EHED 309
EH+D
Sbjct: 309 EHQD 312
>AT3G19260.1 | chr3:6669448-6671257 REVERSE LENGTH=297
Length = 296
Score = 210 bits (535), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 115/268 (42%), Positives = 157/268 (58%), Gaps = 9/268 (3%)
Query: 41 RYLLDCFVFEWIGRKLI-FGKEKVDYEKEETRKKIRKFKESAWKCVYFLSGEILSLSVTY 99
R +LD +VF+ I L+ G + TR KI K KES WK +Y+ + + L V Y
Sbjct: 36 RLVLDRYVFQRIALWLLSTGSAPIKLNDAATRAKIVKCKESLWKLLYYAACDFFVLQVIY 95
Query: 100 NEPWFTNTKYFWVGPGDQVWPDQKIKWKLKAVYMYAAGFYTYSIFALMFWETRRSDFGVS 159
+EPW + K ++ G WP+Q++K +K YM GFY Y + AL+ WETRR DF V
Sbjct: 96 HEPWARDIKLYFHG-----WPNQELKLSIKLYYMCQCGFYVYGVAALLAWETRRKDFAVM 150
Query: 160 MSHHVATVALIVLSYVFRFARVGSVVLAIHDASDVFLEVGKMAKYSHCDXXXXXXXXXXX 219
MSHHV T+ L+ SY+ F R+G+++LA+HDASDVF+E K+ KYS +
Sbjct: 151 MSHHVITIILLSYSYLTSFFRIGAIILALHDASDVFMETAKIFKYSEKEFGASVCFALFA 210
Query: 220 XSWVLLRLTYFPFWILRSTSYEVLLTLDKKKHNFDGPIYXXXXXXXXXXXXXXHIYWWVL 279
SW+LLRL YFPFWI+R+TS E+L LD +G + HIYWW L
Sbjct: 211 VSWLLLRLIYFPFWIIRATSIELLDYLDMTSA--EGTLMYYSFNTMLLMLLVFHIYWWYL 268
Query: 280 IYRMLVRQIKTRN-VGDDVRSDSEGEDE 306
I M+VR +K R VG+D+RSDSE +D+
Sbjct: 269 ICAMIVRLLKNRGKVGEDIRSDSEDDDD 296
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.325 0.140 0.461
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,696,952
Number of extensions: 207411
Number of successful extensions: 675
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 664
Number of HSP's successfully gapped: 4
Length of query: 309
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 211
Effective length of database: 8,419,801
Effective search space: 1776578011
Effective search space used: 1776578011
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 111 (47.4 bits)