BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0264000 Os03g0264000|AK101372
(284 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G19260.1 | chr3:6669448-6671257 REVERSE LENGTH=297 305 1e-83
AT1G13580.2 | chr1:4645006-4646765 REVERSE LENGTH=309 232 2e-61
AT3G25540.1 | chr3:9274752-9276261 FORWARD LENGTH=311 224 5e-59
AT1G26200.1 | chr1:9063471-9064914 REVERSE LENGTH=313 201 5e-52
>AT3G19260.1 | chr3:6669448-6671257 REVERSE LENGTH=297
Length = 296
Score = 305 bits (782), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 149/274 (54%), Positives = 191/274 (69%), Gaps = 1/274 (0%)
Query: 12 FPLTLVFSVGFFCARFFLDRLVYKPLAAYCFSSKASKL-MNDEVRQAKIVKFSESIWKLT 70
F + + F+ GFF R LDR V++ +A + S+ ++ + +ND +AKIVK ES+WKL
Sbjct: 22 FQIAVYFAFGFFFLRLVLDRYVFQRIALWLLSTGSAPIKLNDAATRAKIVKCKESLWKLL 81
Query: 71 YYGSVQAWVLLIIKQEPWSLDTMQYFEGWPNQYMTSSLMLFYMCQCGFYIYSIFALVAWE 130
YY + +VL +I EPW+ D YF GWPNQ + S+ L+YMCQCGFY+Y + AL+AWE
Sbjct: 82 YYAACDFFVLQVIYHEPWARDIKLYFHGWPNQELKLSIKLYYMCQCGFYVYGVAALLAWE 141
Query: 131 TRRKDFAVMMSHHVVTSILIGYAYLTGFFRIGTIILALHDASDVFLETAKLCKYTEKEXX 190
TRRKDFAVMMSHHV+T IL+ Y+YLT FFRIG IILALHDASDVF+ETAK+ KY+EKE
Sbjct: 142 TRRKDFAVMMSHHVITIILLSYSYLTSFFRIGAIILALHDASDVFMETAKIFKYSEKEFG 201
Query: 191 XXXXXXXXXXXXXXXXXIYFPFWIIKTSSYQSIISLRKLEKFPTTLYYIFNTMLLTLLVF 250
IYFPFWII+ +S + + L T +YY FNTMLL LLVF
Sbjct: 202 ASVCFALFAVSWLLLRLIYFPFWIIRATSIELLDYLDMTSAEGTLMYYSFNTMLLMLLVF 261
Query: 251 HIYWWKLICLMIMKQLNNKGQVGEDVRSDSEDEE 284
HIYWW LIC MI++ L N+G+VGED+RSDSED++
Sbjct: 262 HIYWWYLICAMIVRLLKNRGKVGEDIRSDSEDDD 295
>AT1G13580.2 | chr1:4645006-4646765 REVERSE LENGTH=309
Length = 308
Score = 232 bits (591), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 126/283 (44%), Positives = 169/283 (59%), Gaps = 11/283 (3%)
Query: 12 FPLTLVFSVGFFCARFFLDRLVYKPLAAYCFSSKASKLMNDEV--RQAKIVKFSESIWKL 69
F + +F+V F RF LDR V++ LA Y K + M D+ R+ KI KF ES WK
Sbjct: 23 FRVLPLFAVFFPSIRFLLDRFVFEKLAKYLIYGKHRQDMGDDTTERKKKIRKFKESAWKC 82
Query: 70 TYYGSVQAWVLLIIKQEPWSLDTMQYFEG-----WPNQYMTSSLMLFYMCQCGFYIYSIF 124
YY S + L + EPW ++T ++ G WP+Q L L YM GFY YSIF
Sbjct: 83 VYYLSAEILALSVTYNEPWFMNTKYFWVGPGDQTWPDQQTKLKLKLLYMFVAGFYTYSIF 142
Query: 125 ALVAWETRRKDFAVMMSHHVVTSILIGYAYLTGFFRIGTIILALHDASDVFLETAKLCKY 184
ALV WETRR DF V M HH+ T ILI +Y+ F R+G+++LALHDASDVFLE K+ KY
Sbjct: 143 ALVFWETRRSDFGVSMGHHIATLILIVLSYVCSFSRVGSVVLALHDASDVFLEVGKMSKY 202
Query: 185 TEKEXXXXXXXXXXXXXXXXXXXIYFPFWIIKTSSYQSIISLRKLEKFP---TTLYYIFN 241
+ E IY+PFWI+ ++SY+ ++ L K +K P YY+FN
Sbjct: 203 SGAERIASFSFILFVLSWIILRLIYYPFWILWSTSYEVVLELDK-DKHPIEGPIYYYMFN 261
Query: 242 TMLLTLLVFHIYWWKLICLMIMKQLNNKGQVGEDVRSDSEDEE 284
T+L LLV HIYWW L+ M++KQ+ ++G++ EDVRSDSE E+
Sbjct: 262 TLLYCLLVLHIYWWVLMYRMLVKQIQDRGKLSEDVRSDSEGED 304
>AT3G25540.1 | chr3:9274752-9276261 FORWARD LENGTH=311
Length = 310
Score = 224 bits (570), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 125/287 (43%), Positives = 167/287 (58%), Gaps = 16/287 (5%)
Query: 10 SFFPLTLVFSVGFFCARFFLDRLVYKPLAAYCFSSKASKLMNDEVRQ-----AKIVKFSE 64
F PL F+V F RF LDR V++ LA+ + S +D ++ K+ KF E
Sbjct: 24 GFLPL---FAVFFPTIRFLLDRFVFEKLASLVIYGRMSTNKSDNIKDRKKNSPKVRKFKE 80
Query: 65 SIWKLTYYGSVQAWVLLIIKQEPWSLDTMQYFEG-----WPNQYMTSSLMLFYMCQCGFY 119
S WK YY S + L + EPW +T+ ++ G WP+Q M L YM GFY
Sbjct: 81 SAWKCIYYLSAELLALSVTYNEPWFSNTLYFWIGPGDQIWPDQPMKMKLKFLYMFAAGFY 140
Query: 120 IYSIFALVAWETRRKDFAVMMSHHVVTSILIGYAYLTGFFRIGTIILALHDASDVFLETA 179
YSIFALV WETRR DF V M HH+ T +LI +Y+ R G++ILALHDASDVFLE
Sbjct: 141 TYSIFALVFWETRRSDFGVSMGHHITTLVLIVLSYICRLTRAGSVILALHDASDVFLEIG 200
Query: 180 KLCKYTEKEXXXXXXXXXXXXXXXXXXXIYFPFWIIKTSSYQSIISLRKLEKFPT--TLY 237
K+ KY E IY+PFWI+ ++SYQ I+++ K EK P LY
Sbjct: 201 KMSKYCGAESLASISFVLFALSWVVLRLIYYPFWILWSTSYQIIMTVDK-EKHPNGPILY 259
Query: 238 YIFNTMLLTLLVFHIYWWKLICLMIMKQLNNKGQVGEDVRSDSEDEE 284
Y+FNT+L LLV HI+WW LI M++KQ+ ++G++ EDVRSDSE ++
Sbjct: 260 YMFNTLLYFLLVLHIFWWVLIYRMLVKQVQDRGKLSEDVRSDSESDD 306
>AT1G26200.1 | chr1:9063471-9064914 REVERSE LENGTH=313
Length = 312
Score = 201 bits (510), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 118/294 (40%), Positives = 168/294 (57%), Gaps = 18/294 (6%)
Query: 6 PEASSFFPLTLVFSVGFFC-ARFFLDRLVYKPLAAYCFSSKASKLMNDEVRQAKIVKFSE 64
P++S F L L+F FF R LDR +++ +A K ++E R+ K+VKF E
Sbjct: 17 PDSSDF--LVLIFFAPFFLFLRLILDRCIFERVARRLVVPKGLCADSNE-RRKKVVKFKE 73
Query: 65 SIWKLTYYGSVQAWVLLIIKQEPWSLDTMQYFEG-----WPNQYMTSSLMLFYMCQCGFY 119
S WK SV+A+ L + +EPW DT ++ G WP+Q + + YM G
Sbjct: 74 SAWKCLCSFSVEAFALYVTYKEPWFKDTRSFWLGPGDQVWPDQKIKLKMKGMYMFVGGLN 133
Query: 120 IYSIFALVAWETRRKDFAVMMSHHVVTSILIGYAYLTGFFRIGTIILALHDASDVFLETA 179
+Y+ FAL WETRR DF VM+ HH+VTS LI +Y+ F RIG++ILALH+ SDVFLE
Sbjct: 134 VYAFFALFFWETRRSDFKVMLVHHIVTSFLIILSYVFRFARIGSVILALHEISDVFLEIG 193
Query: 180 KLCKYTEKEXXXXXXXXXXXXXXXXXXXIYFPFWIIKTSSYQSIISLRK-------LEKF 232
K+CKY+ E IY+PFWI+ ++SY+SI + +E
Sbjct: 194 KMCKYSGAETMTSVSFVLFFLSWTTLRLIYYPFWILWSTSYESIKVKTEYWDKKHLMETG 253
Query: 233 PTTL--YYIFNTMLLTLLVFHIYWWKLICLMIMKQLNNKGQVGEDVRSDSEDEE 284
P + YY+FNT+L L + HIYWW LI +++ Q+ KG+V +D+RSDSE E+
Sbjct: 254 PPLILFYYVFNTLLYCLQILHIYWWILIYRVLISQIRAKGKVAKDIRSDSEGED 307
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.329 0.140 0.444
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,516,371
Number of extensions: 195722
Number of successful extensions: 594
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 581
Number of HSP's successfully gapped: 4
Length of query: 284
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 187
Effective length of database: 8,447,217
Effective search space: 1579629579
Effective search space used: 1579629579
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 111 (47.4 bits)